Variant report

Variant	rs11186336
Chromosome Location	chr10:92612195-92612196
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92605355..92608309-chr10:92609468..92612446,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10881829	0.85[ASN][1000 genomes]
rs10881831	0.90[ASN][1000 genomes]
rs10881833	0.91[ASN][1000 genomes]
rs10881834	0.91[ASN][1000 genomes]
rs10881835	0.91[ASN][1000 genomes]
rs10881841	0.95[ASN][1000 genomes]
rs10881843	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881845	0.95[ASN][1000 genomes]
rs10881846	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881848	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881850	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186282	0.82[ASN][1000 genomes]
rs11186292	0.85[ASN][1000 genomes]
rs11186298	0.87[ASN][1000 genomes]
rs11186299	0.87[ASN][1000 genomes]
rs11186305	0.90[ASN][1000 genomes]
rs11186306	0.91[ASN][1000 genomes]
rs11186315	0.89[ASN][1000 genomes]
rs11186323	0.91[ASN][1000 genomes]
rs11186333	0.95[ASN][1000 genomes]
rs11186338	0.95[ASN][1000 genomes]
rs11186339	0.85[ASN][1000 genomes]
rs11186343	0.95[ASN][1000 genomes]
rs11186344	0.95[ASN][1000 genomes]
rs11186346	0.95[ASN][1000 genomes]
rs11186352	0.95[ASN][1000 genomes]
rs11186358	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186359	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186360	0.93[ASN][1000 genomes]
rs11186361	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186367	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186368	0.93[ASN][1000 genomes]
rs11498506	0.91[ASN][1000 genomes]
rs11498507	0.91[ASN][1000 genomes]
rs11498662	0.91[ASN][1000 genomes]
rs11527868	0.91[ASN][1000 genomes]
rs12220866	0.87[ASN][1000 genomes]
rs12244538	0.92[ASN][1000 genomes]
rs12249377	0.93[ASN][1000 genomes]
rs12255018	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12256605	0.95[ASN][1000 genomes]
rs12258938	0.95[ASN][1000 genomes]
rs12261011	0.91[ASN][1000 genomes]
rs12264160	0.94[ASN][1000 genomes]
rs1573253	0.85[ASN][1000 genomes]
rs1592143	0.91[ASN][1000 genomes]
rs17102362	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1891311	0.95[ASN][1000 genomes]
rs1891312	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2901026	0.95[ASN][1000 genomes]
rs2901127	0.93[ASN][1000 genomes]
rs4144422	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4282910	0.95[ASN][1000 genomes]
rs4284320	0.85[ASN][1000 genomes]
rs4586057	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58578719	0.93[ASN][1000 genomes]
rs59257274	0.82[ASN][1000 genomes]
rs61481895	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082814	0.92[ASN][1000 genomes]
rs7085559	0.95[ASN][1000 genomes]
rs7096568	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73315609	0.91[ASN][1000 genomes]
rs73315628	0.95[ASN][1000 genomes]
rs74148885	0.95[ASN][1000 genomes]
rs7478556	0.82[ASN][1000 genomes]
rs7903584	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:92610200-92615000	Weak transcription	Osteobl	bone
3	chr10:92610800-92615000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:92611200-92612800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:92611200-92614000	Weak transcription	HMEC	breast
6	chr10:92612000-92612200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:92612000-92614800	Weak transcription	H1 Cell Line	embryonic stem cell

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