Variant report

Variant	rs12244538
Chromosome Location	chr10:92601194-92601195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92598913..92601766-chr10:92601861..92603826,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10881829	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10881831	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881833	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881834	0.94[ASN][1000 genomes]
rs10881835	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881841	0.94[ASN][1000 genomes]
rs10881843	0.91[ASN][1000 genomes]
rs10881845	0.94[ASN][1000 genomes]
rs10881846	0.91[ASN][1000 genomes]
rs10881848	0.91[ASN][1000 genomes]
rs10881850	0.89[ASN][1000 genomes]
rs11186282	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186292	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186298	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186299	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186305	0.93[ASN][1000 genomes]
rs11186306	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186315	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186323	0.94[ASN][1000 genomes]
rs11186333	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186336	0.92[ASN][1000 genomes]
rs11186338	0.94[ASN][1000 genomes]
rs11186339	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186343	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186344	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186346	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186352	0.94[ASN][1000 genomes]
rs11186358	0.89[ASN][1000 genomes]
rs11186359	0.89[ASN][1000 genomes]
rs11186360	0.92[ASN][1000 genomes]
rs11186361	0.89[ASN][1000 genomes]
rs11186367	0.89[ASN][1000 genomes]
rs11186368	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11498506	0.94[ASN][1000 genomes]
rs11498507	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11498662	0.94[ASN][1000 genomes]
rs11527868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12220866	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12249377	0.96[ASN][1000 genomes]
rs12255018	0.91[ASN][1000 genomes]
rs12256605	0.94[ASN][1000 genomes]
rs12258938	0.96[ASN][1000 genomes]
rs12261011	0.94[ASN][1000 genomes]
rs12264160	0.98[ASN][1000 genomes]
rs1573253	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1592143	0.94[ASN][1000 genomes]
rs17102362	0.89[ASN][1000 genomes]
rs1891311	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1891312	0.91[ASN][1000 genomes]
rs2901026	0.94[ASN][1000 genomes]
rs2901127	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4144422	0.91[ASN][1000 genomes]
rs4282910	0.94[ASN][1000 genomes]
rs4284320	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4586057	0.91[ASN][1000 genomes]
rs58578719	0.96[ASN][1000 genomes]
rs59257274	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61481895	0.91[ASN][1000 genomes]
rs7082814	0.91[ASN][1000 genomes]
rs7085559	0.94[ASN][1000 genomes]
rs7096568	0.91[ASN][1000 genomes]
rs73315609	0.94[ASN][1000 genomes]
rs73315628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74148885	0.96[ASN][1000 genomes]
rs7478556	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7903584	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516743	chr10:92083015-92605119	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1049931	chr10:92083932-92605364	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1036058	chr10:92471568-92605364	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92584200-92602400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:92599400-92607200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:92600000-92602400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:92600400-92602200	Weak transcription	HMEC	breast
6	chr10:92600400-92606200	Weak transcription	NHEK	skin
7	chr10:92600400-92606400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:92600800-92602200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links