Variant report

Variant	rs10881841
Chromosome Location	chr10:92637153-92637154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92633871..92635944-chr10:92636115..92638437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10881829	0.92[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10881831	0.92[ASN][1000 genomes]
rs10881833	0.91[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs10881834	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881835	0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs10881843	0.97[ASN][1000 genomes]
rs10881845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881846	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881848	0.85[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881850	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186282	0.82[ASN][1000 genomes]
rs11186292	0.85[ASN][1000 genomes]
rs11186298	0.92[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs11186299	0.93[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11186305	0.92[ASN][1000 genomes]
rs11186306	0.92[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs11186315	0.91[ASN][1000 genomes]
rs11186323	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186333	0.92[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs11186336	0.95[ASN][1000 genomes]
rs11186338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186339	0.90[ASN][1000 genomes]
rs11186343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11186344	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11186346	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11186352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186358	0.94[ASN][1000 genomes]
rs11186359	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186361	0.94[ASN][1000 genomes]
rs11186367	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186368	0.98[ASN][1000 genomes]
rs11498506	0.90[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11498507	0.93[ASN][1000 genomes]
rs11498662	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11527868	0.92[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs12220866	0.93[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs12244538	0.94[ASN][1000 genomes]
rs12249377	0.89[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12255018	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12256605	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258938	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12261011	0.89[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12264160	0.89[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573253	0.85[ASN][1000 genomes]
rs1592143	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17102362	0.94[ASN][1000 genomes]
rs1891311	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1891312	0.97[ASN][1000 genomes]
rs2901026	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901127	0.92[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs4144422	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4282910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4284320	0.85[ASN][1000 genomes]
rs4586057	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs58578719	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59257274	0.82[ASN][1000 genomes]
rs61481895	0.97[ASN][1000 genomes]
rs7082814	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7085559	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096568	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73315609	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73315628	0.98[ASN][1000 genomes]
rs74148885	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7478556	0.82[ASN][1000 genomes]
rs7903584	0.94[ASN][1000 genomes]
rs7916720	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632400-92647800	Weak transcription	Aorta	Aorta
2	chr10:92632600-92638200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:92632800-92646000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:92632800-92646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:92632800-92647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:92632800-92647800	Weak transcription	Gastric	stomach
7	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
8	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
9	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
11	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
12	chr10:92633000-92637800	Weak transcription	HSMMtube	muscle
13	chr10:92633000-92640400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:92633000-92640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:92633200-92644000	Weak transcription	NHLF	lung
16	chr10:92633200-92650000	Weak transcription	Fetal Heart	heart
17	chr10:92633600-92646000	Weak transcription	Right Ventricle	heart
18	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:92634200-92639800	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:92634400-92653000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:92634800-92638000	Strong transcription	Fetal Brain Female	brain
25	chr10:92634800-92639600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:92634800-92640000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:92635000-92638400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:92635000-92639000	Strong transcription	HepG2	liver
30	chr10:92635000-92656000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr10:92635200-92638000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:92635200-92638800	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr10:92635200-92639400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:92635200-92639600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:92635200-92641800	Strong transcription	HMEC	breast
36	chr10:92635200-92655000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr10:92635200-92655000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
43	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:92635400-92638000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:92635400-92638000	Strong transcription	K562	blood
46	chr10:92635400-92638200	Strong transcription	Fetal Kidney	kidney
47	chr10:92635400-92638600	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr10:92635400-92639000	Strong transcription	Osteobl	bone
49	chr10:92635400-92639400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:92635400-92639600	Strong transcription	Adipose Nuclei	Adipose

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