Variant report

Variant	rs10881848
Chromosome Location	chr10:92655559-92655560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10881829	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs10881831	0.89[ASN][1000 genomes]
rs10881833	0.81[CHB][hapmap];0.90[ASN][1000 genomes]
rs10881834	0.90[ASN][1000 genomes]
rs10881835	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10881841	0.85[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881843	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881845	0.83[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881846	0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881850	0.85[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186282	0.81[ASN][1000 genomes]
rs11186292	0.84[ASN][1000 genomes]
rs11186298	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11186299	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11186305	0.89[ASN][1000 genomes]
rs11186306	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11186315	0.88[ASN][1000 genomes]
rs11186323	0.90[ASN][1000 genomes]
rs11186333	0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186336	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186338	0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186339	0.86[ASN][1000 genomes]
rs11186343	0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186344	0.97[ASN][1000 genomes]
rs11186346	0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186352	0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186358	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186359	0.85[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186360	0.85[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186361	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186367	0.85[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186368	0.94[ASN][1000 genomes]
rs11498506	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11498507	0.90[ASN][1000 genomes]
rs11498662	0.90[ASN][1000 genomes]
rs11527868	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs12220866	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs12244538	0.91[ASN][1000 genomes]
rs12249377	0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs12255018	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256605	0.97[ASN][1000 genomes]
rs12258938	0.94[ASN][1000 genomes]
rs12261011	0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs12264160	0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs1573253	0.84[ASN][1000 genomes]
rs1592143	0.90[ASN][1000 genomes]
rs17102362	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1891311	0.84[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs1891312	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901026	0.97[ASN][1000 genomes]
rs2901127	0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs4144422	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282910	0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs4284320	0.84[ASN][1000 genomes]
rs4586057	0.85[CHB][hapmap];0.91[JPT][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58578719	0.92[ASN][1000 genomes]
rs59257274	0.81[ASN][1000 genomes]
rs61481895	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082814	0.93[ASN][1000 genomes]
rs7085559	0.97[ASN][1000 genomes]
rs7096568	0.85[CHB][hapmap];0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315609	0.90[ASN][1000 genomes]
rs73315628	0.94[ASN][1000 genomes]
rs74148885	0.94[ASN][1000 genomes]
rs7478556	0.81[ASN][1000 genomes]
rs7903584	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916720	0.85[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
2	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
4	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
5	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:92635000-92656000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
16	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:92635400-92656600	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:92635400-92661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
20	chr10:92639400-92658600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:92640800-92658800	Strong transcription	Dnd41	blood
22	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:92641000-92658600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr10:92641000-92658800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:92641800-92656200	Strong transcription	GM12878-XiMat	blood
26	chr10:92643600-92658400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:92644200-92656600	Strong transcription	Primary T cells from cord blood	blood
28	chr10:92644400-92658400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr10:92645000-92661000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr10:92645200-92668000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:92645400-92658800	Strong transcription	Fetal Intestine Large	intestine
32	chr10:92645600-92656400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr10:92645600-92656800	Strong transcription	Placenta	Placenta
34	chr10:92645800-92663600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:92646000-92657200	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:92646800-92656000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
38	chr10:92648400-92656200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:92648400-92656800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:92648400-92666400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
42	chr10:92648600-92658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:92648600-92663800	Weak transcription	Lung	lung
44	chr10:92648600-92667400	Weak transcription	Gastric	stomach
45	chr10:92648600-92668600	Weak transcription	Spleen	Spleen
46	chr10:92648600-92669600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:92648600-92671600	Weak transcription	Fetal Intestine Small	intestine
48	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea

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