Variant report

Variant	rs7096568
Chromosome Location	chr10:92641636-92641637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:92641465-92641665	MCF10A-Er-Src	breast:	n/a	chr10:92641610-92641620 chr10:92641611-92641620 chr10:92641609-92641621 chr10:92641612-92641619 chr10:92641611-92641619 chr10:92641610-92641619
2	FOS	chr10:92641516-92641744	MCF10A-Er-Src	breast:	n/a	chr10:92641610-92641620 chr10:92641611-92641620 chr10:92641609-92641621 chr10:92641612-92641619 chr10:92641611-92641619 chr10:92641610-92641619
3	JUND	chr10:92641272-92641997	SK-N-SH	brain:	n/a	chr10:92641610-92641620 chr10:92641611-92641620 chr10:92641609-92641621 chr10:92641612-92641619 chr10:92641611-92641619 chr10:92641609-92641620 chr10:92641610-92641619
4	JUND	chr10:92641441-92641798	HepG2	liver:	n/a	chr10:92641610-92641620 chr10:92641611-92641620 chr10:92641609-92641621 chr10:92641612-92641619 chr10:92641611-92641619 chr10:92641609-92641620 chr10:92641610-92641619

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92631710..92635669-chr10:92637980..92642007,3	K562	blood:

Variant related genes	Relation type
ENSG00000222305	TF binding region
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10881829	0.92[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs10881831	0.89[ASN][1000 genomes]
rs10881833	0.91[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs10881834	0.90[ASN][1000 genomes]
rs10881835	0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs10881841	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881845	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10881846	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881848	0.85[CHB][hapmap];0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186282	0.81[ASN][1000 genomes]
rs11186292	0.84[ASN][1000 genomes]
rs11186298	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs11186299	0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11186305	0.89[ASN][1000 genomes]
rs11186306	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs11186315	0.88[ASN][1000 genomes]
rs11186323	0.90[ASN][1000 genomes]
rs11186333	0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186336	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186338	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186339	0.86[ASN][1000 genomes]
rs11186343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186344	0.97[ASN][1000 genomes]
rs11186346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186352	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186360	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186368	0.94[ASN][1000 genomes]
rs11498506	0.92[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs11498507	0.90[ASN][1000 genomes]
rs11498662	0.90[ASN][1000 genomes]
rs11527868	0.92[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs12220866	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs12244538	0.91[ASN][1000 genomes]
rs12249377	0.92[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs12255018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256605	0.97[ASN][1000 genomes]
rs12258938	0.94[ASN][1000 genomes]
rs12261011	0.92[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs12264160	0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs1573253	0.84[ASN][1000 genomes]
rs1592143	0.90[ASN][1000 genomes]
rs17102362	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1891311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1891312	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901026	0.97[ASN][1000 genomes]
rs2901127	0.92[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs4144422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282910	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4284320	0.84[ASN][1000 genomes]
rs4586057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58578719	0.92[ASN][1000 genomes]
rs59257274	0.81[ASN][1000 genomes]
rs61481895	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082814	0.93[ASN][1000 genomes]
rs7085559	0.97[ASN][1000 genomes]
rs73315609	0.90[ASN][1000 genomes]
rs73315628	0.94[ASN][1000 genomes]
rs74148885	0.94[ASN][1000 genomes]
rs7478556	0.81[ASN][1000 genomes]
rs7903584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632400-92647800	Weak transcription	Aorta	Aorta
2	chr10:92632800-92646000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:92632800-92646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:92632800-92647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:92632800-92647800	Weak transcription	Gastric	stomach
6	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
7	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
8	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
10	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
11	chr10:92633200-92644000	Weak transcription	NHLF	lung
12	chr10:92633200-92650000	Weak transcription	Fetal Heart	heart
13	chr10:92633600-92646000	Weak transcription	Right Ventricle	heart
14	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:92634400-92653000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:92635000-92656000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:92635200-92641800	Strong transcription	HMEC	breast
22	chr10:92635200-92655000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr10:92635200-92655000	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
29	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:92635400-92642000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:92635400-92642000	Strong transcription	Fetal Lung	lung
32	chr10:92635400-92642200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:92635400-92642400	Strong transcription	Primary B cells from cord blood	blood
34	chr10:92635400-92642800	Strong transcription	Primary T cells from cord blood	blood
35	chr10:92635400-92643000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:92635400-92643200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:92635400-92643200	Strong transcription	Placenta	Placenta
38	chr10:92635400-92643200	Strong transcription	HSMM	muscle
39	chr10:92635400-92655200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:92635400-92656600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:92635400-92661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:92635600-92641800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr10:92635800-92642600	Strong transcription	Brain Germinal Matrix	brain
44	chr10:92635800-92651400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:92636600-92643000	Weak transcription	Hela-S3	cervix
46	chr10:92636600-92644200	Weak transcription	Stomach Mucosa	stomach
47	chr10:92636600-92644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:92636800-92646800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
50	chr10:92637200-92646800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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