Variant report

Variant	rs11186367
Chromosome Location	chr10:92673607-92673608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92670581..92673630-chr10:92677940..92680636,3	MCF-7	breast:
2	chr10:92671333..92674706-chr10:92675096..92677939,3	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10881829	0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10881831	0.86[ASN][1000 genomes]
rs10881833	0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10881834	0.87[ASN][1000 genomes]
rs10881835	0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs10881841	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10881843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881845	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10881846	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881848	0.85[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881850	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186292	0.82[ASN][1000 genomes]
rs11186298	0.92[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11186299	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11186305	0.86[ASN][1000 genomes]
rs11186306	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs11186315	0.85[ASN][1000 genomes]
rs11186323	0.87[ASN][1000 genomes]
rs11186333	0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs11186336	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186338	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186339	0.84[ASN][1000 genomes]
rs11186343	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186344	0.94[ASN][1000 genomes]
rs11186346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186352	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11186358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186359	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186360	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11186361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186368	0.97[ASN][1000 genomes]
rs11498506	0.92[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11498507	0.87[ASN][1000 genomes]
rs11498662	0.87[ASN][1000 genomes]
rs11527868	0.92[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12220866	0.92[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs12244538	0.89[ASN][1000 genomes]
rs12249377	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs12255018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12256605	0.94[ASN][1000 genomes]
rs12258938	0.92[ASN][1000 genomes]
rs12261011	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs12264160	0.92[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs1573253	0.82[ASN][1000 genomes]
rs1592143	0.87[ASN][1000 genomes]
rs17102362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891311	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1891312	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2901026	0.94[ASN][1000 genomes]
rs2901127	0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs3824739	0.85[CHD][hapmap]
rs4144422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282910	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4284320	0.82[ASN][1000 genomes]
rs4586057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58578719	0.90[ASN][1000 genomes]
rs61481895	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7082814	0.95[ASN][1000 genomes]
rs7085559	0.94[ASN][1000 genomes]
rs7096568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73315609	0.87[ASN][1000 genomes]
rs73315628	0.92[ASN][1000 genomes]
rs74148885	0.92[ASN][1000 genomes]
rs7903584	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11186367	IFIT1	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
2	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
3	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
6	chr10:92649200-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:92651400-92675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
9	chr10:92654600-92675000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:92654800-92674000	Weak transcription	Fetal Heart	heart
11	chr10:92656400-92678400	Weak transcription	NHDF-Ad	bronchial
12	chr10:92658200-92676800	Weak transcription	NH-A	brain
13	chr10:92661000-92680000	Weak transcription	Placenta	Placenta
14	chr10:92663400-92679600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:92665400-92675000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:92665400-92675000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:92665400-92675000	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:92665400-92675200	Weak transcription	Fetal Lung	lung
19	chr10:92668400-92678600	Enhancers	Dnd41	blood
20	chr10:92671600-92674600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:92672200-92673800	Strong transcription	Osteobl	bone
22	chr10:92672400-92674200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:92672400-92674600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:92672400-92674800	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr10:92672400-92676600	Weak transcription	Hela-S3	cervix
26	chr10:92672400-92679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:92672600-92674800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:92672600-92677200	Weak transcription	HepG2	liver
29	chr10:92672600-92677600	Strong transcription	A549	lung
30	chr10:92672800-92674800	Strong transcription	HSMM	muscle
31	chr10:92672800-92679800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
33	chr10:92673200-92674800	Strong transcription	HSMMtube	muscle
34	chr10:92673400-92673800	Strong transcription	Left Ventricle	heart
35	chr10:92673400-92674000	Enhancers	GM12878-XiMat	blood
36	chr10:92673600-92674000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:92673600-92674000	Transcr. at gene 5' and 3'	HUVEC	blood vessel

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