Variant report

Variant rs3829956
Chromosome Location chr17:18219835-18219836
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:18217400-18220400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:18218600-18221200 ZNF genes & repeats Fetal Intestine Large intestine
3 chr17:18218600-18221600 Transcr. at gene 5' and 3' Dnd41 blood
4 chr17:18218800-18222200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
5 chr17:18219000-18220000 Flanking Active TSS Duodenum Mucosa Duodenum
6 chr17:18219000-18220000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
7 chr17:18219000-18220200 Flanking Active TSS Primary T cells from cord blood blood
8 chr17:18219000-18220400 Flanking Active TSS Hela-S3 cervix
9 chr17:18219000-18221800 ZNF genes & repeats Fetal Intestine Small intestine
10 chr17:18219200-18220000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
11 chr17:18219200-18220000 Flanking Active TSS Muscle Satellite Cultured Cells --
12 chr17:18219200-18220000 Enhancers Primary mononuclear cells fromperipheralblood Blood
13 chr17:18219400-18220000 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr17:18219400-18220000 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
15 chr17:18219400-18220000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
16 chr17:18219400-18220000 Enhancers Sigmoid Colon Sigmoid Colon
17 chr17:18219400-18220000 Transcr. at gene 5' and 3' NHDF-Ad bronchial
18 chr17:18219400-18220200 Flanking Active TSS K562 blood
19 chr17:18219400-18220800 Enhancers Primary T helper naive cells fromperipheralblood blood
20 chr17:18219400-18220800 Enhancers Primary Natural Killer cells fromperipheralblood blood
21 chr17:18219400-18221800 Enhancers Small Intestine intestine
22 chr17:18219400-18224200 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
23 chr17:18219400-18224200 Enhancers Fetal Brain Male brain
24 chr17:18219400-18224400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr17:18219400-18224800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr17:18219400-18227200 Genic enhancers Primary T cells fromperipheralblood blood
27 chr17:18219400-18266000 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr17:18219600-18220000 Enhancers H1 Cell Line embryonic stem cell
29 chr17:18219600-18220000 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
30 chr17:18219600-18220000 Transcr. at gene 5' and 3' Colon Smooth Muscle Colon
31 chr17:18219600-18220000 Transcr. at gene 5' and 3' Duodenum Smooth Muscle Duodenum
32 chr17:18219600-18220000 Transcr. at gene 5' and 3' A549 lung
33 chr17:18219600-18220200 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr17:18219600-18220200 Transcr. at gene 5' and 3' hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr17:18219600-18220200 Genic enhancers Fetal Kidney kidney
36 chr17:18219600-18220200 Enhancers Gastric stomach
37 chr17:18219600-18220400 Weak transcription Ovary ovary
38 chr17:18219600-18220600 Genic enhancers Brain Cingulate Gyrus brain
39 chr17:18219600-18220600 Enhancers Right Ventricle heart
40 chr17:18219600-18220800 Enhancers Primary T helper 17 cells PMA-I stimulated --
41 chr17:18219600-18220800 Enhancers Primary T helper cells fromperipheralblood blood
42 chr17:18219600-18220800 Genic enhancers Adipose Nuclei Adipose
43 chr17:18219600-18220800 Weak transcription Aorta Aorta
44 chr17:18219600-18220800 Enhancers Pancreas Pancrea
45 chr17:18219600-18221000 Genic enhancers Brain Inferior Temporal Lobe brain
46 chr17:18219600-18221600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr17:18219600-18221800 Genic enhancers Thymus Thymus
48 chr17:18219600-18222200 Enhancers Placenta Amnion Placenta Amnion
49 chr17:18219600-18222400 Genic enhancers Fetal Thymus thymus
50 chr17:18219600-18222400 Genic enhancers HMEC breast

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