Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:139828566..139831156-chr6:139858781..139860705,2	K562	blood:
2	chr6:139818335..139820226-chr6:139825228..139828991,3	K562	blood:
3	chr6:139770584..139773183-chr6:139828829..139830952,2	K562	blood:
4	chr6:139818335..139820226-chr6:139826249..139828991,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11155072	0.99[ASN][1000 genomes]
rs11155073	0.99[ASN][1000 genomes]
rs17585887	0.99[ASN][1000 genomes]
rs17585915	0.99[ASN][1000 genomes]
rs2908522	0.95[ASN][1000 genomes]
rs2982521	0.98[ASN][1000 genomes]
rs4896468	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896469	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs589235	0.86[ASN][1000 genomes]
rs592423	0.88[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs605066	0.99[ASN][1000 genomes]
rs607342	0.99[ASN][1000 genomes]
rs608736	0.86[ASN][1000 genomes]
rs628751	0.87[CHB][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs632057	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.99[ASN][1000 genomes]
rs634869	0.99[ASN][1000 genomes]
rs635243	0.81[ASN][1000 genomes]
rs635769	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs643381	0.86[ASN][1000 genomes]
rs651837	0.99[ASN][1000 genomes]
rs654689	0.99[ASN][1000 genomes]
rs668459	0.99[ASN][1000 genomes]
rs672457	0.99[ASN][1000 genomes]
rs679582	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71562509	0.88[ASN][1000 genomes]
rs9800462	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1026819	chr6:139813809-139834012	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3861397	NMBR	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139822600-139829200	Weak transcription	K562	blood
2	chr6:139828000-139831200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:139828800-139831800	Enhancers	HepG2	liver

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