Variant report

Variant	rs668459
Chromosome Location	chr6:139835689-139835690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139829217..139832116-chr6:139835147..139837059,2	K562	blood:
2	chr6:139832742..139835243-chr6:139835600..139839246,3	K562	blood:
3	chr6:139835055..139838753-chr6:139840846..139843120,3	K562	blood:
4	chr6:139829657..139832116-chr6:139834405..139837059,2	K562	blood:
5	chr6:139811168..139812845-chr6:139833635..139836382,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11155072	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11155073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585887	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908522	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2982521	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3861397	0.99[ASN][1000 genomes]
rs4896468	0.98[ASN][1000 genomes]
rs4896469	0.83[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap]
rs589235	0.87[ASN][1000 genomes]
rs590856	0.96[CEU][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs592423	0.96[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs605066	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607342	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608736	0.87[ASN][1000 genomes]
rs628751	0.80[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs632057	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634869	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635243	0.82[ASN][1000 genomes]
rs635769	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs636202	0.82[CEU][hapmap]
rs643381	0.87[ASN][1000 genomes]
rs651837	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679582	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562509	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9800462	0.83[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

Variant related diseases (count:3)

Disease	PMID	Source
Mean corpuscular hemoglobin	23263863	GWAS catalog
Adiponectin levels	22479202	GWAS catalog
Mean corpuscular volume	23263863	GWAS catalog

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139831800-139836000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:139831800-139836000	Weak transcription	HepG2	liver
3	chr6:139832000-139836200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:139832000-139836400	Weak transcription	Adipose Nuclei	Adipose
5	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
6	chr6:139832800-139835800	Weak transcription	Fetal Heart	heart
7	chr6:139835600-139836400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:139835600-139837000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:139835600-139837000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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