Variant report

Variant	rs672457
Chromosome Location	chr6:139836562-139836563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139694875..139697306-chr6:139836159..139839254,4	K562	blood:
2	chr6:139829217..139832116-chr6:139835147..139837059,2	K562	blood:
3	chr6:139832742..139835243-chr6:139835600..139839246,3	K562	blood:
4	chr6:139693313..139697618-chr6:139836425..139839153,5	K562	blood:
5	chr6:139836503..139839268-chr6:139841620..139844665,3	K562	blood:
6	chr6:139835055..139838753-chr6:139840846..139843120,3	K562	blood:
7	chr6:139829657..139832116-chr6:139834405..139837059,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11155072	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11155073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585887	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908522	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2982521	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3861397	0.99[ASN][1000 genomes]
rs4896468	0.98[ASN][1000 genomes]
rs589235	0.87[ASN][1000 genomes]
rs590856	0.81[EUR][1000 genomes]
rs592423	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs605066	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607342	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608736	0.87[ASN][1000 genomes]
rs628751	0.87[ASN][1000 genomes]
rs632057	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634869	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635243	0.82[ASN][1000 genomes]
rs635769	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs643381	0.87[ASN][1000 genomes]
rs651837	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679582	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562509	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139835600-139837000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:139835600-139837000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:139835800-139837000	Enhancers	Fetal Heart	heart
5	chr6:139836000-139837000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:139836000-139837000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:139836000-139837000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:139836000-139837000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:139836000-139837000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:139836000-139837000	Enhancers	HepG2	liver
11	chr6:139836000-139837200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:139836000-139837800	Enhancers	K562	blood
13	chr6:139836000-139838000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:139836200-139836600	Enhancers	GM12878-XiMat	blood
15	chr6:139836200-139836800	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:139836200-139837000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:139836200-139837000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:139836200-139837000	Enhancers	HSMMtube	muscle
19	chr6:139836200-139837000	Enhancers	Osteobl	bone
20	chr6:139836200-139837200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:139836200-139837400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:139836400-139836800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:139836400-139837000	Enhancers	NHDF-Ad	bronchial
24	chr6:139836400-139837200	Enhancers	Adipose Nuclei	Adipose
25	chr6:139836400-139837800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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