Variant report

Variant	rs71562509
Chromosome Location	chr6:139835423-139835424
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139829217..139832116-chr6:139835147..139837059,2	K562	blood:
2	chr6:139835055..139838753-chr6:139840846..139843120,3	K562	blood:
3	chr6:139829657..139832116-chr6:139834405..139837059,2	K562	blood:
4	chr6:139811168..139812845-chr6:139833635..139836382,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CITED2-6	chr6:139835357-139835425	ucscGeneNc_uc003qiq_1
2	lnc-CITED2-6	chr6:139835357-139835425	NONHSAT115256

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11155072	0.89[ASN][1000 genomes]
rs11155073	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17585887	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17585915	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2908522	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2982521	0.90[ASN][1000 genomes]
rs3861397	0.88[ASN][1000 genomes]
rs4896468	0.86[ASN][1000 genomes]
rs605066	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs607342	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs632057	0.89[ASN][1000 genomes]
rs634869	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs635769	0.89[ASN][1000 genomes]
rs651837	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs654689	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs668459	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs672457	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs679582	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139829600-139835600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:139830600-139835600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:139831800-139836000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:139831800-139836000	Weak transcription	HepG2	liver
5	chr6:139832000-139836200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:139832000-139836400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
8	chr6:139832800-139835800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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