Variant report

Variant	rs634869
Chromosome Location	chr6:139831757-139831758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139829657..139832116-chr6:139834405..139837059,2	K562	blood:
2	chr6:139829217..139832116-chr6:139835147..139837059,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11155072	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11155073	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585887	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585915	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908522	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2982521	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3861397	0.99[ASN][1000 genomes]
rs4896468	0.98[ASN][1000 genomes]
rs4896469	0.89[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap]
rs589235	0.87[ASN][1000 genomes]
rs590856	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs592423	0.96[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs605066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607342	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608736	0.87[ASN][1000 genomes]
rs628751	0.80[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs632057	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs635243	0.82[ASN][1000 genomes]
rs635769	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636202	0.82[CEU][hapmap]
rs643381	0.87[ASN][1000 genomes]
rs651837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654689	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668459	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672457	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679582	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562509	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9800462	0.89[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1026819	chr6:139813809-139834012	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139828800-139831800	Enhancers	HepG2	liver
2	chr6:139829200-139832800	Enhancers	Fetal Heart	heart
3	chr6:139829600-139835600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:139830600-139832000	Enhancers	Adipose Nuclei	Adipose
5	chr6:139830600-139835600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:139831200-139831800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:139831200-139831800	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:139831200-139831800	Enhancers	K562	blood
9	chr6:139831600-139831800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:139831600-139832000	Enhancers	Liver	Liver
11	chr6:139831600-139832000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:139831600-139832000	Enhancers	Right Atrium	heart

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