Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC46A3-4	chr13:29575315-29577832	NONHSAT032711
2	lnc-SLC46A3-4	chr13:29575364-29577832	ucscGeneNc_uc001usr_1

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1040913	1.00[ASN][1000 genomes]
rs1040914	0.81[ASN][1000 genomes]
rs1322377	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407435	0.81[ASN][1000 genomes]
rs3858734	0.83[ASN][1000 genomes]
rs3858735	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886761	0.83[ASN][1000 genomes]
rs3892746	0.83[ASN][1000 genomes]
rs3926785	0.83[ASN][1000 genomes]
rs4110543	0.83[ASN][1000 genomes]
rs4110544	0.83[ASN][1000 genomes]
rs4110546	0.83[ASN][1000 genomes]
rs4110547	0.83[ASN][1000 genomes]
rs4366574	0.83[ASN][1000 genomes]
rs4445745	0.83[ASN][1000 genomes]
rs4575377	0.83[ASN][1000 genomes]
rs4768992	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769657	0.82[EUR][1000 genomes]
rs7140033	0.82[ASN][1000 genomes]
rs7987203	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7996516	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001072	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9506065	0.81[ASN][1000 genomes]
rs9506070	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506072	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9508222	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550431	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29575200-29579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:29575800-29577800	Weak transcription	Left Ventricle	heart
3	chr13:29576200-29580200	Enhancers	Fetal Heart	heart
4	chr13:29576400-29577400	Weak transcription	Aorta	Aorta

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