Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1040913	1.00[ASN][1000 genomes]
rs1040914	0.81[ASN][1000 genomes]
rs1322377	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407435	0.81[ASN][1000 genomes]
rs3858734	0.83[ASN][1000 genomes]
rs3858735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886761	0.83[ASN][1000 genomes]
rs3892746	0.83[ASN][1000 genomes]
rs3895286	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3926785	0.83[ASN][1000 genomes]
rs4110543	0.83[ASN][1000 genomes]
rs4110544	0.83[ASN][1000 genomes]
rs4110546	0.83[ASN][1000 genomes]
rs4110547	0.83[ASN][1000 genomes]
rs4366574	0.83[ASN][1000 genomes]
rs4445745	0.83[ASN][1000 genomes]
rs4575377	0.83[ASN][1000 genomes]
rs4769657	0.81[EUR][1000 genomes]
rs7140033	0.82[ASN][1000 genomes]
rs7987203	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7996516	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001072	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9506065	0.81[ASN][1000 genomes]
rs9506070	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506072	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9508222	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550431	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4768992	DENND4A	trans	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29579200-29581000	Enhancers	Fetal Stomach	stomach
2	chr13:29579200-29581200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:29580000-29581000	Enhancers	Fetal Lung	lung
4	chr13:29580200-29581200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:29580200-29581200	Enhancers	Left Ventricle	heart
6	chr13:29580200-29581200	Enhancers	Dnd41	blood
7	chr13:29580400-29580800	Enhancers	Fetal Heart	heart
8	chr13:29580400-29581200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:29580600-29580800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:29580600-29580800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:29580600-29581200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr13:29580600-29581200	Enhancers	Aorta	Aorta

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