Variant report
| Variant | rs7996516 |
|---|---|
| Chromosome Location | chr13:29573924-29573925 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1040913 | 1.00[ASN][1000 genomes] |
| rs1040914 | 0.81[ASN][1000 genomes] |
| rs1322377 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1407435 | 0.81[ASN][1000 genomes] |
| rs3858734 | 0.83[ASN][1000 genomes] |
| rs3858735 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3886761 | 0.83[ASN][1000 genomes] |
| rs3892746 | 0.83[ASN][1000 genomes] |
| rs3895286 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3926785 | 0.83[ASN][1000 genomes] |
| rs4110543 | 0.83[ASN][1000 genomes] |
| rs4110544 | 0.83[ASN][1000 genomes] |
| rs4110546 | 0.83[ASN][1000 genomes] |
| rs4110547 | 0.83[ASN][1000 genomes] |
| rs4366574 | 0.83[ASN][1000 genomes] |
| rs4445745 | 0.83[ASN][1000 genomes] |
| rs4575377 | 0.83[ASN][1000 genomes] |
| rs4768992 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4769657 | 0.85[EUR][1000 genomes] |
| rs7140033 | 0.82[ASN][1000 genomes] |
| rs7987203 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8001072 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9506065 | 0.81[ASN][1000 genomes] |
| rs9506070 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9506072 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9508222 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9550431 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533835 | chr13:29141132-29962069 | Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:29566800-29574400 | Weak transcription | Fetal Heart | heart |
