Variant report

Variant	rs3896379
Chromosome Location	chr14:78502019-78502020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12894998	0.82[ASN][1000 genomes]
rs177224	0.85[ASN][1000 genomes]
rs177226	0.83[ASN][1000 genomes]
rs177229	0.83[ASN][1000 genomes]
rs177232	0.82[ASN][1000 genomes]
rs177238	0.80[ASN][1000 genomes]
rs177243	0.80[ASN][1000 genomes]
rs1990793	0.88[JPT][hapmap]
rs4903688	0.80[ASN][1000 genomes]
rs4903689	0.80[ASN][1000 genomes]
rs7153421	0.80[ASN][1000 genomes]
rs8005420	0.88[JPT][hapmap]
rs8021165	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757576	chr14:78379156-78502019	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759999	chr14:78379156-78502019	Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv902108	chr14:78459047-78541015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78496800-78502200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:78500200-78502200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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