Variant report

Variant	rs177238
Chromosome Location	chr14:78491151-78491152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78489446..78492270-chr14:78502668..78504455,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12894998	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs177216	0.81[GIH][hapmap]
rs177224	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177226	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs177229	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177232	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs177239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs177243	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955571	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3896379	0.80[ASN][1000 genomes]
rs4020124	0.80[AMR][1000 genomes]
rs4903678	0.82[ASN][1000 genomes]
rs4903686	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4903687	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4903688	1.00[ASN][1000 genomes]
rs4903689	1.00[ASN][1000 genomes]
rs6574416	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7140733	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7146614	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7152858	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7153421	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7160437	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8005420	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs8019668	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8021165	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8022316	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34345	chr14:78370455-78496587	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2757576	chr14:78379156-78502019	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759999	chr14:78379156-78502019	Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv902108	chr14:78459047-78541015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78477600-78491400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:78488600-78491400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78489000-78491600	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:78489200-78494800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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