Variant report

Variant	rs7160437
Chromosome Location	chr14:78457686-78457687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:78327949..78329774-chr14:78457367..78458415,8	MCF-7	breast:
2	chr14:78328254..78328771-chr14:78457551..78458296,2	K562	blood:
3	chr14:78329160..78329700-chr14:78457466..78458180,2	K562	blood:
4	chr14:78328370..78329208-chr14:78457451..78458246,4	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12894998	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs177224	0.88[ASN][1000 genomes]
rs177226	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs177229	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs177232	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs177238	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs177239	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs177243	0.93[ASN][1000 genomes]
rs1955571	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903678	0.89[ASN][1000 genomes]
rs4903686	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4903687	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4903688	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903689	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6574416	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7140733	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7146614	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7152858	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7153421	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8019668	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8021165	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8022316	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34345	chr14:78370455-78496587	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2757576	chr14:78379156-78502019	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759999	chr14:78379156-78502019	Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78454000-78459000	Enhancers	Brain Cingulate Gyrus	brain
2	chr14:78454200-78458400	Enhancers	Brain Angular Gyrus	brain
3	chr14:78456200-78458800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:78456400-78458200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:78456400-78458400	Enhancers	Brain Hippocampus Middle	brain
6	chr14:78456400-78458400	Enhancers	Brain Substantia Nigra	brain
7	chr14:78456600-78458200	Enhancers	Brain Anterior Caudate	brain
8	chr14:78456600-78458400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr14:78457200-78457800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:78457400-78457800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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