Variant report
| Variant | rs177229 |
|---|---|
| Chromosome Location | chr14:78499903-78499904 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12894998 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs177224 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs177226 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs177232 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs177238 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs177239 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs177243 | 0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1955571 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3896379 | 0.83[ASN][1000 genomes] |
| rs4020124 | 0.80[AMR][1000 genomes] |
| rs4903686 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4903687 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4903688 | 0.97[ASN][1000 genomes] |
| rs4903689 | 0.97[ASN][1000 genomes] |
| rs6574416 | 0.92[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7140733 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7146614 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7152858 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7153421 | 0.82[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7160437 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8005420 | 1.00[YRI][hapmap] |
| rs8019668 | 0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8021165 | 0.82[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8022316 | 0.90[AMR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757576 | chr14:78379156-78502019 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2759999 | chr14:78379156-78502019 | Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv902108 | chr14:78459047-78541015 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78496800-78502200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr14:78499000-78500200 | Enhancers | Brain Germinal Matrix | brain |
