Variant report

Variant	rs1955571
Chromosome Location	chr14:78455537-78455538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78444831..78447431-chr14:78454880..78457473,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12894998	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs177216	0.81[GIH][hapmap]
rs177224	0.88[ASN][1000 genomes]
rs177226	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs177229	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs177232	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs177238	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs177239	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs177243	0.93[ASN][1000 genomes]
rs4903678	0.89[ASN][1000 genomes]
rs4903686	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4903687	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4903688	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903689	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6574416	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7140733	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7146614	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7152858	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7153421	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7160437	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005420	0.80[MEX][hapmap]
rs8019668	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8021165	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8022316	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34345	chr14:78370455-78496587	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2757576	chr14:78379156-78502019	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759999	chr14:78379156-78502019	Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78447800-78457200	Weak transcription	Fetal Thymus	thymus
2	chr14:78452400-78457400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:78452600-78457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:78453200-78456200	Enhancers	Brain Substantia Nigra	brain
5	chr14:78453800-78456200	Enhancers	Brain Anterior Caudate	brain
6	chr14:78454000-78459000	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:78454200-78458400	Enhancers	Brain Angular Gyrus	brain
8	chr14:78454400-78455800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:78454400-78456000	Enhancers	Osteobl	bone
10	chr14:78454400-78456200	Enhancers	NHLF	lung
11	chr14:78454400-78456400	Enhancers	Adipose Nuclei	Adipose
12	chr14:78454600-78455800	Enhancers	HSMM	muscle
13	chr14:78454600-78456200	Enhancers	NH-A	brain
14	chr14:78454600-78457400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:78454600-78457400	Enhancers	Fetal Muscle Leg	muscle
16	chr14:78454800-78456200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:78455000-78456200	Enhancers	NHDF-Ad	bronchial
18	chr14:78455000-78456400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:78455200-78455600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:78455200-78455600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:78455200-78455600	Enhancers	HSMMtube	muscle
22	chr14:78455200-78455800	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr14:78455200-78456000	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr14:78455400-78455600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:78455400-78455600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:78455400-78455800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:78455400-78456200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:78455400-78456200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:78455400-78456200	Enhancers	Fetal Muscle Trunk	muscle
30	chr14:78455400-78456200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr14:78455400-78456400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:78455400-78456600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:78455400-78457000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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