Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:78328598..78329121-chr14:78445665..78446575,2	MCF-7	breast:
2	chr14:78444831..78447431-chr14:78454880..78457473,2	MCF-7	breast:
3	chr14:78445331..78447338-chr14:78448935..78452086,3	K562	blood:
4	chr14:78440338..78444584-chr14:78445440..78448740,5	MCF-7	breast:
5	chr14:78327921..78329109-chr14:78445594..78446641,5	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12894998	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs177226	0.82[AMR][1000 genomes]
rs177229	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs177232	0.82[ASN][1000 genomes]
rs177238	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs177239	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs177243	0.84[ASN][1000 genomes]
rs1955571	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903678	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4903686	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4903687	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4903688	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4903689	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6574416	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7146614	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7152858	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7153421	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7160437	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8019668	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8021165	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8022316	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34345	chr14:78370455-78496587	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2757576	chr14:78379156-78502019	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759999	chr14:78379156-78502019	Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78443400-78445800	Enhancers	Brain Hippocampus Middle	brain
2	chr14:78443800-78445800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:78444000-78445800	Enhancers	Brain Substantia Nigra	brain
4	chr14:78444600-78445800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr14:78444800-78446600	Weak transcription	Adipose Nuclei	Adipose
6	chr14:78445000-78445800	Enhancers	Brain Angular Gyrus	brain
7	chr14:78445000-78447200	Weak transcription	Right Atrium	heart
8	chr14:78445400-78446200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:78445600-78445800	Enhancers	Brain Anterior Caudate	brain
10	chr14:78445600-78446200	Active TSS	Brain Cingulate Gyrus	brain
11	chr14:78445600-78446400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:78445600-78446800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr14:78445600-78446800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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