Variant report
| Variant | rs4903689 |
|---|---|
| Chromosome Location | chr14:78484880-78484881 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12894998 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs177224 | 0.80[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs177226 | 0.93[ASN][1000 genomes] |
| rs177229 | 0.97[ASN][1000 genomes] |
| rs177232 | 0.85[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs177238 | 1.00[ASN][1000 genomes] |
| rs177239 | 0.99[ASN][1000 genomes] |
| rs177243 | 0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1955571 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3896379 | 0.80[ASN][1000 genomes] |
| rs4903678 | 0.82[ASN][1000 genomes] |
| rs4903686 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4903687 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4903688 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6574416 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7140733 | 0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7146614 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7152858 | 0.94[ASN][1000 genomes] |
| rs7153421 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7160437 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs8019668 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8021165 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8022316 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34345 | chr14:78370455-78496587 | Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2757576 | chr14:78379156-78502019 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759999 | chr14:78379156-78502019 | Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv902108 | chr14:78459047-78541015 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78477600-78491400 | Weak transcription | Brain Cingulate Gyrus | brain |
