Variant report
| Variant | rs3900780 |
|---|---|
| Chromosome Location | chr3:42694617-42694618 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:42686400-42695000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr3:42686600-42694800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr3:42688600-42694800 | Weak transcription | Fetal Kidney | kidney |
| 4 | chr3:42688800-42694800 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 5 | chr3:42690600-42694800 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 6 | chr3:42691600-42694800 | Enhancers | Placenta Amnion | Placenta Amnion |
| 7 | chr3:42691800-42695200 | Weak transcription | Thymus | Thymus |
| 8 | chr3:42692000-42694800 | Weak transcription | Primary T cells from cord blood | blood |
| 9 | chr3:42692200-42694800 | Enhancers | Esophagus | oesophagus |
| 10 | chr3:42692200-42694800 | Enhancers | Placenta | Placenta |
| 11 | chr3:42692400-42694800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 12 | chr3:42692400-42694800 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 13 | chr3:42692400-42694800 | Enhancers | HUES64 Cell Line | embryonic stem cell |
| 14 | chr3:42692400-42695000 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
| 15 | chr3:42692600-42694800 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 16 | chr3:42692600-42694800 | Flanking Active TSS | Brain Hippocampus Middle | brain |
| 17 | chr3:42692600-42695000 | Enhancers | H1 Cell Line | embryonic stem cell |
| 18 | chr3:42692600-42695000 | Flanking Active TSS | Brain Cingulate Gyrus | brain |
| 19 | chr3:42692600-42695400 | Flanking Active TSS | Osteobl | bone |
| 20 | chr3:42692600-42695600 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
| 21 | chr3:42692600-42695600 | Flanking Active TSS | Muscle Satellite Cultured Cells | -- |
| 22 | chr3:42692800-42694800 | Enhancers | Lung | lung |
| 23 | chr3:42692800-42695000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 24 | chr3:42692800-42695000 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 25 | chr3:42692800-42695000 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 26 | chr3:42692800-42695000 | Flanking Active TSS | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 27 | chr3:42692800-42695000 | Flanking Active TSS | Brain Dorsolateral Prefrontal Cortex | brain |
| 28 | chr3:42692800-42695200 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
| 29 | chr3:42692800-42695200 | Flanking Active TSS | Brain Angular Gyrus | brain |
| 30 | chr3:42692800-42695200 | Flanking Active TSS | Colon Smooth Muscle | Colon |
| 31 | chr3:42692800-42695400 | Flanking Active TSS | Rectal Smooth Muscle | rectum |
| 32 | chr3:42692800-42695400 | Flanking Active TSS | Stomach Smooth Muscle | stomach |
| 33 | chr3:42692800-42695400 | Flanking Active TSS | HSMMtube | muscle |
| 34 | chr3:42693000-42695000 | Flanking Active TSS | Brain Inferior Temporal Lobe | brain |
| 35 | chr3:42693000-42695200 | Flanking Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 36 | chr3:42693000-42695200 | Flanking Active TSS | NHDF-Ad | bronchial |
| 37 | chr3:42693000-42695400 | Flanking Active TSS | HSMM | muscle |
| 38 | chr3:42693000-42695600 | Flanking Active TSS | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 39 | chr3:42693200-42694800 | Flanking Active TSS | Brain Substantia Nigra | brain |
| 40 | chr3:42693200-42694800 | Enhancers | Spleen | Spleen |
| 41 | chr3:42693200-42695200 | Enhancers | Fetal Heart | heart |
| 42 | chr3:42693200-42695400 | Bivalent Enhancer | Primary B cells from peripheral blood | blood |
| 43 | chr3:42693200-42695400 | Flanking Active TSS | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 44 | chr3:42693200-42695400 | Flanking Active TSS | Right Ventricle | heart |
| 45 | chr3:42693200-42695400 | Flanking Active TSS | A549 | lung |
| 46 | chr3:42693200-42695400 | Flanking Active TSS | Hela-S3 | cervix |
| 47 | chr3:42693400-42694800 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 48 | chr3:42693400-42694800 | Enhancers | Fetal Intestine Large | intestine |
| 49 | chr3:42693400-42695000 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
| 50 | chr3:42693400-42695200 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
