Variant report

Variant	rs3903661
Chromosome Location	chr6:26421876-26421877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:26420638-26422563	H1-hESC	embryonic stem cell:	n/a	n/a
2	RFX5	chr6:26420705-26422190	H1-hESC	embryonic stem cell:	n/a	chr6:26421550-26421558
3	POLR2A	chr6:26421496-26422077	U87	brain:	n/a	n/a
4	POLR2A	chr6:26421565-26422590	GM12878	blood:	n/a	n/a
5	NFYB	chr6:26421431-26421881	K562	blood:	n/a	chr6:26421573-26421588
6	MAX	chr6:26421300-26422067	Hela-S3	cervix:	n/a	n/a
7	ZNF143	chr6:26421424-26422050	GM12878	blood:	n/a	n/a
8	MAX	chr6:26421673-26422076	K562	blood:	n/a	n/a
9	POLR2A	chr6:26421515-26422181	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr6:26421813-26421910	K562	blood:	n/a	n/a
11	MAX	chr6:26421586-26422143	K562	blood:	n/a	n/a
12	SMC3	chr6:26420816-26421950	Hela-S3	cervix:	n/a	chr6:26420986-26421000
13	SPI1	chr6:26421763-26422219	HL-60	blood:	n/a	chr6:26422017-26422030 chr6:26422033-26422046 chr6:26422018-26422031
14	ZBTB7A	chr6:26421818-26422047	HepG2	liver:	n/a	n/a
15	MAFK	chr6:26421698-26421895	K562	blood:	n/a	n/a
16	ZBTB33	chr6:26421519-26421886	HepG2	liver:	n/a	chr6:26421682-26421697
17	NFYA	chr6:26421333-26421919	K562	blood:	n/a	n/a
18	RFX5	chr6:26420811-26422070	HepG2	liver:	n/a	chr6:26421550-26421558
19	POLR2A	chr6:26421550-26421892	U87	brain:	n/a	n/a
20	RCOR1	chr6:26421809-26421953	K562	blood:	n/a	n/a
21	ZBTB7A	chr6:26421778-26422073	K562	blood:	n/a	n/a
22	POLR2A	chr6:26421571-26421877	HepG2	liver:	n/a	n/a
23	MYBL2	chr6:26420765-26422133	HepG2	liver:	n/a	n/a
24	HMGN3	chr6:26421836-26422087	K562	blood:	n/a	n/a
25	POLR2A	chr6:26421539-26421973	ECC-1	luminal epithelium:	n/a	n/a
26	UBTF	chr6:26421751-26422147	K562	blood:	n/a	n/a
27	POLR2A	chr6:26421872-26421893	MCF-7	breast:	n/a	n/a
28	SPI1	chr6:26421846-26422186	GM12878	blood:	n/a	chr6:26422017-26422030 chr6:26422033-26422046 chr6:26422018-26422031
29	CTCF	chr6:26421760-26421910	WERI-Rb-1	eye:	n/a	n/a
30	EBF1	chr6:26421788-26421956	GM12878	blood:	n/a	n/a
31	POLR2A	chr6:26421578-26421883	MCF10A-Er-Src	breast:	n/a	n/a
32	RFX5	chr6:26420813-26422131	Hela-S3	cervix:	n/a	chr6:26421550-26421558
33	TAF1	chr6:26420843-26422528	H1-hESC	embryonic stem cell:	n/a	n/a
34	SMC3	chr6:26420637-26422211	SK-N-SH	brain:	n/a	chr6:26420986-26421000
35	PML	chr6:26421452-26422023	K562	blood:	n/a	n/a
36	CREB1	chr6:26421141-26421932	H1-hESC	embryonic stem cell:	n/a	n/a
37	PRDM1	chr6:26421503-26421883	Hela-S3	cervix:	n/a	n/a
38	HEY1	chr6:26421544-26421888	HepG2	liver:	n/a	n/a
39	CREB1	chr6:26420775-26422133	HepG2	liver:	n/a	n/a
40	CREB1	chr6:26421335-26422025	GM12878	blood:	n/a	n/a
41	POLR2A	chr6:26421561-26421913	SK-N-SH	brain:	n/a	n/a
42	TAF1	chr6:26421509-26421926	Hela-S3	cervix:	n/a	n/a
43	TAF1	chr6:26421545-26422070	K562	blood:	n/a	n/a
44	IKZF1	chr6:26421524-26421971	GM12878	blood:	n/a	chr6:26421939-26421947
45	ZNF263	chr6:26420888-26422615	HEK293-T-REx	kidney:	n/a	chr6:26422032-26422041 chr6:26422017-26422038 chr6:26422016-26422025
46	CHD2	chr6:26421474-26421972	HepG2	liver:	n/a	n/a
47	E2F6	chr6:26421838-26422111	K562	blood:	n/a	n/a
48	RFX5	chr6:26419671-26423665	IMR90	lung:	n/a	chr6:26421550-26421558
49	POLR2A	chr6:26421722-26422442	GM12878	blood:	n/a	n/a
50	POLR2A	chr6:26421015-26422439	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:26193666..26195814-chr6:26420014..26422966,2	K562	blood:
2	chr6:26420245..26422646-chr6:26519763..26522632,2	K562	blood:
3	chr6:26420252..26422779-chr6:26519711..26522673,2	K562	blood:
4	chr6:26196016..26198386-chr6:26419404..26421954,3	K562	blood:

Variant related genes	Relation type
BTN2A3P	TF binding region
ENSG00000197409	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000228223	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10447390	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10447391	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807008	1.00[ASN][1000 genomes]
rs10946820	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946821	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946823	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946824	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946825	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946826	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946827	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946828	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946829	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946830	1.00[ASN][1000 genomes]
rs10946832	1.00[ASN][1000 genomes]
rs12191917	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194001	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194073	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194412	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196371	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12198993	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201546	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203108	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203120	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205476	0.84[ASN][1000 genomes]
rs12206812	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206839	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207930	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208329	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213625	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214444	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12214486	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214924	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214976	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662604	1.00[ASN][1000 genomes]
rs12664899	0.84[ASN][1000 genomes]
rs17537465	0.84[ASN][1000 genomes]
rs17539219	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610161	1.00[ASN][1000 genomes]
rs17611220	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393652	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2393655	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393656	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28571747	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893844	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893845	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893846	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893847	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3198487	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3208734	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34268421	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807025	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846843	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846844	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846847	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846848	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846849	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3902051	1.00[ASN][1000 genomes]
rs4083469	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305717	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45499696	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609015	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711108	1.00[ASN][1000 genomes]
rs4711109	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711110	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4711111	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712989	1.00[ASN][1000 genomes]
rs4712990	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4712992	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712993	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712994	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712995	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712996	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712999	0.80[AMR][1000 genomes]
rs55775018	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55786210	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55957716	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55994013	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56023587	1.00[ASN][1000 genomes]
rs56139485	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56143200	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56157336	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56161420	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56182232	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56190518	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56207464	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56280732	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56325223	1.00[ASN][1000 genomes]
rs57275245	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60750900	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456721	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456722	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900725	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901245	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907302	0.80[AMR][1000 genomes]
rs6910023	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920986	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926878	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928454	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931648	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72841540	0.84[ASN][1000 genomes]
rs7744254	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745238	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745767	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751280	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754940	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755398	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7768108	1.00[ASN][1000 genomes]
rs7770214	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770699	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775365	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482729	chr6:26291011-26470898	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv883492	chr6:26367689-26436592	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv883493	chr6:26367689-26442786	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv883494	chr6:26367833-26442786	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv883495	chr6:26367833-26443853	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3334611	chr6:26367893-26443308	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
12	nsv883497	chr6:26369549-26442786	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv883498	chr6:26369549-26443853	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv883499	chr6:26377591-26454454	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
15	esv3427999	chr6:26378373-26453532	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
16	nsv462664	chr6:26379537-26451553	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv601184	chr6:26379537-26451553	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	nsv969358	chr6:26420389-26423517	Genic enhancers Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3903661	BTN2A3P	cis	Artery Tibial	GTEx
rs3903661	BTN3A1	Cis_1M	lymphoblastoid	RTeQTL
rs3903661	BTN2A2	Cis_1M	lymphoblastoid	RTeQTL
rs3903661	BTN2A3P	cis	Esophagus Muscularis	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26420800-26422600	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:26421000-26422200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:26421000-26422200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr6:26421000-26422200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:26421000-26422400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:26421000-26422400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr6:26421000-26422400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:26421000-26422400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:26421000-26422600	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:26421000-26422600	Active TSS	H9 Cell Line	embryonic stem cell
11	chr6:26421000-26422600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:26421000-26422600	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:26421000-26423000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr6:26421200-26422200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:26421200-26422200	Active TSS	Aorta	Aorta
16	chr6:26421200-26422400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:26421200-26422400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:26421200-26422400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr6:26421200-26422400	Active TSS	Brain Anterior Caudate	brain
20	chr6:26421200-26422400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:26421200-26422600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:26421200-26422600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:26421200-26422600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:26421200-26422600	Active TSS	Brain Germinal Matrix	brain
25	chr6:26421200-26422600	Active TSS	Duodenum Mucosa	Duodenum
26	chr6:26421200-26422600	Active TSS	Esophagus	oesophagus
27	chr6:26421200-26422600	Active TSS	Ovary	ovary
28	chr6:26421200-26422600	Active TSS	Right Atrium	heart
29	chr6:26421200-26422600	Active TSS	Right Ventricle	heart
30	chr6:26421400-26422000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr6:26421400-26422000	Active TSS	Liver	Liver
32	chr6:26421400-26422200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:26421400-26422200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:26421400-26422200	Active TSS	Fetal Heart	heart
35	chr6:26421400-26422200	Active TSS	Fetal Muscle Trunk	muscle
36	chr6:26421400-26422200	Active TSS	Placenta Amnion	Placenta Amnion
37	chr6:26421400-26422200	Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr6:26421400-26422200	Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr6:26421400-26422200	Active TSS	Stomach Mucosa	stomach
40	chr6:26421400-26422200	Bivalent/Poised TSS	HepG2	liver
41	chr6:26421400-26422200	Active TSS	HUVEC	blood vessel
42	chr6:26421400-26422400	Active TSS	H1 Cell Line	embryonic stem cell
43	chr6:26421400-26422400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:26421400-26422400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:26421400-26422400	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr6:26421400-26422400	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr6:26421400-26422400	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr6:26421400-26422400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:26421400-26422400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:26421400-26422400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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