Variant report

Variant	rs3936951
Chromosome Location	chr20:14084759-14084760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1033860	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1118572	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1120243	1.00[YRI][hapmap]
rs1980702	1.00[AMR][1000 genomes]
rs2327828	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2423771	1.00[AMR][1000 genomes]
rs2423776	1.00[AMR][1000 genomes]
rs3121496	1.00[AMR][1000 genomes]
rs3848782	1.00[YRI][hapmap]
rs3909059	1.00[YRI][hapmap]
rs3909060	1.00[YRI][hapmap]
rs4814280	1.00[YRI][hapmap]
rs4814281	1.00[YRI][hapmap]
rs4814286	1.00[YRI][hapmap]
rs6033863	1.00[YRI][hapmap]
rs6033874	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6033875	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6033900	1.00[AMR][1000 genomes]
rs6042440	1.00[AMR][1000 genomes]
rs6042465	1.00[AMR][1000 genomes]
rs6042467	1.00[YRI][hapmap]
rs6042481	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6042482	1.00[AMR][1000 genomes]
rs6042504	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6042539	0.81[AFR][1000 genomes]
rs6042540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6042546	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6042587	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6074691	1.00[YRI][hapmap]
rs6079320	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6079343	1.00[AMR][1000 genomes]
rs6079347	1.00[AMR][1000 genomes]
rs6079348	1.00[AMR][1000 genomes]
rs6105218	1.00[YRI][hapmap]
rs927564	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv585438	chr20:14054163-14171905	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1057486	chr20:14077828-14469129	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1058887	chr20:14080114-14173534	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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