Variant report
Variant | rs6042467 |
---|---|
Chromosome Location | chr20:13964036-13964037 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1033860 | 1.00[AMR][1000 genomes] |
rs1118572 | 1.00[AMR][1000 genomes] |
rs1120243 | 1.00[YRI][hapmap] |
rs1980702 | 1.00[AMR][1000 genomes] |
rs2327828 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs2423771 | 1.00[AMR][1000 genomes] |
rs2423776 | 1.00[AMR][1000 genomes] |
rs3121496 | 1.00[AMR][1000 genomes] |
rs3848782 | 1.00[YRI][hapmap] |
rs3909059 | 1.00[YRI][hapmap] |
rs3909060 | 1.00[YRI][hapmap] |
rs3936951 | 1.00[YRI][hapmap] |
rs4814280 | 1.00[YRI][hapmap] |
rs4814281 | 1.00[YRI][hapmap] |
rs4814286 | 1.00[YRI][hapmap] |
rs6033863 | 1.00[YRI][hapmap] |
rs6033874 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs6033875 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs6033900 | 1.00[AMR][1000 genomes] |
rs6042440 | 1.00[AMR][1000 genomes] |
rs6042465 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6042481 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs6042482 | 1.00[AMR][1000 genomes] |
rs6042504 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs6042540 | 1.00[AMR][1000 genomes] |
rs6042546 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs6042587 | 1.00[AMR][1000 genomes] |
rs6074691 | 1.00[YRI][hapmap] |
rs6079320 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
rs6079343 | 1.00[AMR][1000 genomes] |
rs6079347 | 1.00[AMR][1000 genomes] |
rs6079348 | 1.00[AMR][1000 genomes] |
rs6105218 | 1.00[YRI][hapmap] |
rs927564 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916202 | chr20:13421724-14043615 | Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
3 | nsv912689 | chr20:13570331-14155881 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv1059221 | chr20:13589432-13977327 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
5 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
No data |