Variant report

Variant	rs4017458
Chromosome Location	chr1:160837622-160837623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:160837404-160838338	HL-60	blood:	n/a	n/a
2	SPI1	chr1:160837402-160838357	HL-60	blood:	n/a	chr1:160838079-160838088
3	CHD2	chr1:160837425-160837734	K562	blood:	n/a	n/a
4	POLR2A	chr1:160837259-160837694	K562	blood:	n/a	n/a
5	POLR2A	chr1:160837597-160837725	K562	blood:	n/a	n/a

Variant related genes	Relation type
CD244	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10908807	0.95[ASN][1000 genomes]
rs10908808	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11265499	0.85[ASN][1000 genomes]
rs11265500	0.85[ASN][1000 genomes]
rs11265501	0.96[ASN][1000 genomes]
rs11265504	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11578752	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12035295	0.81[ASN][1000 genomes]
rs12035537	0.85[ASN][1000 genomes]
rs12036607	0.94[ASN][1000 genomes]
rs12036670	0.96[ASN][1000 genomes]
rs12037395	0.96[ASN][1000 genomes]
rs12038419	0.96[ASN][1000 genomes]
rs12040750	0.96[ASN][1000 genomes]
rs12041508	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12046019	0.85[ASN][1000 genomes]
rs12046021	0.85[ASN][1000 genomes]
rs12409609	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12566557	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1333062	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1412849	0.94[ASN][1000 genomes]
rs17387157	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2151293	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2184067	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2184068	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2184069	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2274905	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2274907	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2274908	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2274909	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2274910	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34067571	0.89[AMR][1000 genomes]
rs3766356	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3766357	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3766359	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3818724	0.83[AMR][1000 genomes]
rs4017448	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4017459	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4017460	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4656943	0.96[ASN][1000 genomes]
rs4656944	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4656945	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4656948	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4656949	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4656950	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4656951	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4656953	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4656955	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58418513	0.84[ASN][1000 genomes]
rs59712018	0.83[ASN][1000 genomes]
rs61803285	0.85[ASN][1000 genomes]
rs6427550	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6427551	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6427553	0.83[AMR][1000 genomes]
rs6658416	0.83[AMR][1000 genomes]
rs6667400	0.87[AMR][1000 genomes]
rs6676174	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6685693	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6698454	0.85[ASN][1000 genomes]
rs6699162	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6699166	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6700146	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6703406	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7410867	0.96[ASN][1000 genomes]
rs7411035	0.83[AMR][1000 genomes]
rs7414728	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7524351	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7532133	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs869167	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs869168	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs914793	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs952804	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs955370	0.96[ASN][1000 genomes]
rs955371	0.95[ASN][1000 genomes]
rs959047	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160832600-160847400	Weak transcription	Spleen	Spleen
2	chr1:160833600-160840000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:160834600-160838400	Enhancers	Fetal Intestine Small	intestine
4	chr1:160834600-160849000	Weak transcription	Ovary	ovary
5	chr1:160835000-160838400	Enhancers	Fetal Intestine Large	intestine
6	chr1:160835400-160846400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:160836200-160844600	Weak transcription	A549	lung
8	chr1:160836400-160844600	Weak transcription	Pancreas	Pancrea
9	chr1:160836800-160838000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:160836800-160839600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:160836800-160840000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr1:160837400-160837800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:160837400-160840400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr1:160837600-160838000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:160837600-160839000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:160837600-160839400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links