Variant report

Variant	rs6658416
Chromosome Location	chr1:160864754-160864755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:160864586-160864966	GM12892	blood:	n/a	n/a
2	POLR2A	chr1:160864691-160864805	A549	lung:	n/a	n/a
3	POLR2A	chr1:160864631-160864892	Gliobla	brain:	n/a	n/a
4	POLR2A	chr1:160864663-160864805	A549	lung:	n/a	n/a
5	TAF1	chr1:160864622-160864840	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr1:160864624-160864851	A549	lung:	n/a	n/a
7	POLR2A	chr1:160864639-160864813	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr1:160864696-160864804	ProgFib	skin:	n/a	n/a
9	POLR2A	chr1:160864641-160864823	GM12878	blood:	n/a	n/a
10	POLR2A	chr1:160864525-160864902	Hela-S3	cervix:	n/a	n/a
11	HEY1	chr1:160864651-160864897	K562	blood:	n/a	n/a
12	POLR2A	chr1:160864642-160864809	MCF-7	breast:	n/a	n/a
13	POLR2A	chr1:160864696-160864801	MCF-7	breast:	n/a	n/a
14	POLR2A	chr1:160864601-160864818	A549	lung:	n/a	n/a
15	POLR2A	chr1:160864637-160864837	Hela-S3	cervix:	n/a	n/a
16	HEY1	chr1:160864632-160864881	K562	blood:	n/a	n/a
17	POLR2A	chr1:160864667-160864802	A549	lung:	n/a	n/a
18	POLR2A	chr1:160864660-160864797	HepG2	liver:	n/a	n/a
19	POLR2A	chr1:160864639-160864943	GM12878	blood:	n/a	n/a
20	TAF1	chr1:160864640-160864805	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000213080	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10797087	0.86[EUR][1000 genomes]
rs10908808	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10908809	0.89[EUR][1000 genomes]
rs10908810	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10908811	0.86[EUR][1000 genomes]
rs10908812	0.86[EUR][1000 genomes]
rs11265510	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11265514	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11265516	0.86[EUR][1000 genomes]
rs11265519	0.86[EUR][1000 genomes]
rs11578752	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12125065	0.80[EUR][1000 genomes]
rs12135639	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12409609	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1333062	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17387157	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1810924	0.86[EUR][1000 genomes]
rs1855187	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1930596	0.86[EUR][1000 genomes]
rs2039415	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2151293	0.86[AMR][1000 genomes]
rs2184067	0.84[AMR][1000 genomes]
rs2184069	0.84[AMR][1000 genomes]
rs2225591	0.86[EUR][1000 genomes]
rs2236515	0.91[EUR][1000 genomes]
rs2274905	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2274907	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2274908	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2274909	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2274910	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2297559	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34067571	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3766356	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3766357	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3766359	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3818724	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3820094	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3953095	0.80[EUR][1000 genomes]
rs4017448	0.84[AMR][1000 genomes]
rs4017458	0.83[AMR][1000 genomes]
rs4017460	0.86[AMR][1000 genomes]
rs4656277	0.80[EUR][1000 genomes]
rs4656944	0.86[AMR][1000 genomes]
rs4656945	0.86[AMR][1000 genomes]
rs4656950	0.86[AMR][1000 genomes]
rs4656951	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4656953	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4656955	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4656956	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4656957	0.91[EUR][1000 genomes]
rs4656958	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4656959	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6427550	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6427551	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6427552	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6427553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6667400	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6671490	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676174	0.84[AMR][1000 genomes]
rs6685693	0.86[AMR][1000 genomes]
rs6691868	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6694415	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6699162	0.86[AMR][1000 genomes]
rs6699166	0.87[AMR][1000 genomes]
rs6700146	0.84[AMR][1000 genomes]
rs6703406	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6704490	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7411035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7414728	0.86[AMR][1000 genomes]
rs7414826	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7524351	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7532133	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7551697	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs869168	0.86[AMR][1000 genomes]
rs952804	0.84[AMR][1000 genomes]
rs959047	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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