Variant report
| Variant | rs405952 |
|---|---|
| Chromosome Location | chr9:102045443-102045444 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1032835 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs151169 | 0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs162616 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs162623 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs162629 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs162630 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1648641 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1746155 | 0.83[AMR][1000 genomes] |
| rs184437 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs189042 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs193021 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs383602 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs418919 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs433706 | 0.81[AMR][1000 genomes] |
| rs449188 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4579588 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs4743338 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs504640 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs526102 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs58132610 | 0.81[EUR][1000 genomes] |
| rs692905 | 0.81[AMR][1000 genomes] |
| rs701366 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
| rs701371 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7048711 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893620 | chr9:102029791-102194921 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv526378 | chr9:102045144-102056057 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
