Variant report

Variant	rs162630
Chromosome Location	chr9:102017929-102017930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102013065..102014831-chr9:102017770..102020217,2	K562	blood:
2	chr9:102016447..102018282-chr9:102021293..102023502,2	K562	blood:
3	chr9:101990790..101993783-chr9:102017197..102019888,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs151169	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs162616	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs162623	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs162629	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1648641	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1746155	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs189042	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs193021	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2114429	0.83[ASN][1000 genomes]
rs2900576	0.89[ASN][1000 genomes]
rs383602	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs418919	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs433706	0.83[ASN][1000 genomes]
rs449188	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4742765	0.93[ASN][1000 genomes]
rs4743336	0.89[ASN][1000 genomes]
rs526102	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56408008	0.83[ASN][1000 genomes]
rs57418404	0.87[ASN][1000 genomes]
rs58111537	0.83[ASN][1000 genomes]
rs58132610	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs692905	0.83[ASN][1000 genomes]
rs701371	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7025649	0.93[ASN][1000 genomes]
rs7031176	0.83[ASN][1000 genomes]
rs7031193	0.94[ASN][1000 genomes]
rs7048711	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101993600-102018200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:102002400-102021400	Weak transcription	Fetal Brain Female	brain
3	chr9:102002400-102021600	Weak transcription	Gastric	stomach
4	chr9:102002800-102021400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:102003200-102018000	Weak transcription	Left Ventricle	heart
6	chr9:102004200-102020000	Weak transcription	Pancreas	Pancrea
7	chr9:102006400-102021600	Weak transcription	Aorta	Aorta
8	chr9:102010400-102018400	Weak transcription	Psoas Muscle	Psoas
9	chr9:102015800-102018400	Weak transcription	Right Ventricle	heart
10	chr9:102016200-102019000	Enhancers	Brain Substantia Nigra	brain
11	chr9:102016200-102021400	Weak transcription	HSMM	muscle
12	chr9:102016400-102019200	Enhancers	Brain Hippocampus Middle	brain
13	chr9:102016400-102021600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:102016600-102018800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr9:102016600-102021400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr9:102016600-102021400	Enhancers	Fetal Thymus	thymus
17	chr9:102016600-102021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:102016600-102021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:102016600-102021600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:102016600-102022200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:102016800-102018200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:102016800-102019200	Enhancers	GM12878-XiMat	blood
23	chr9:102016800-102021200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:102016800-102021600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:102016800-102021800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:102016800-102021800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr9:102016800-102022200	Weak transcription	Primary B cells from cord blood	blood
28	chr9:102016800-102022800	Enhancers	Thymus	Thymus
29	chr9:102017000-102018400	Enhancers	Brain Cingulate Gyrus	brain
30	chr9:102017000-102021600	Weak transcription	HMEC	breast
31	chr9:102017200-102018000	Enhancers	Brain Anterior Caudate	brain
32	chr9:102017200-102021000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr9:102017600-102018600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr9:102017600-102018800	Enhancers	Brain Angular Gyrus	brain
35	chr9:102017600-102020800	Enhancers	Fetal Heart	heart
36	chr9:102017600-102021400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links