Variant report

Variant	rs2900576
Chromosome Location	chr9:102031559-102031560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151169	1.00[ASN][1000 genomes]
rs162616	0.98[ASN][1000 genomes]
rs162623	0.94[ASN][1000 genomes]
rs162629	1.00[ASN][1000 genomes]
rs162630	0.89[ASN][1000 genomes]
rs1648641	0.93[ASN][1000 genomes]
rs1746155	0.94[ASN][1000 genomes]
rs184437	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs189042	0.98[ASN][1000 genomes]
rs193021	1.00[ASN][1000 genomes]
rs2114429	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs383602	0.94[ASN][1000 genomes]
rs418919	1.00[ASN][1000 genomes]
rs433706	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs449188	0.94[ASN][1000 genomes]
rs4742765	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743336	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526102	0.94[ASN][1000 genomes]
rs56408008	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57418404	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58111537	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58132610	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs692905	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs701371	0.94[ASN][1000 genomes]
rs7025649	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7031176	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7031193	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7048711	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
3	chr9:102029400-102034600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:102029800-102034800	Weak transcription	GM12878-XiMat	blood
5	chr9:102030600-102032400	Enhancers	HUVEC	blood vessel
6	chr9:102030800-102031800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:102031000-102031600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:102031000-102031800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:102031000-102031800	Enhancers	Osteobl	bone
10	chr9:102031000-102032000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:102031000-102032000	Enhancers	NHLF	lung
12	chr9:102031200-102031600	Enhancers	NH-A	brain
13	chr9:102031200-102032200	Enhancers	NHDF-Ad	bronchial
14	chr9:102031400-102031600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:102031400-102031800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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