Variant report

Variant	rs7031193
Chromosome Location	chr9:102027830-102027831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102021323..102023178-chr9:102026226..102028226,2	K562	blood:
2	chr9:102021323..102023427-chr9:102025498..102028226,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1032835	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs151169	1.00[CHB][hapmap];0.82[CHD][hapmap];0.94[ASN][1000 genomes]
rs162616	0.92[ASN][1000 genomes]
rs162623	1.00[ASN][1000 genomes]
rs162629	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs162630	0.94[ASN][1000 genomes]
rs1648641	0.98[ASN][1000 genomes]
rs1746155	1.00[ASN][1000 genomes]
rs184437	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs189042	0.90[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs193021	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs2114429	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2900576	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs383602	0.89[ASN][1000 genomes]
rs405952	0.90[CHB][hapmap]
rs418919	0.94[ASN][1000 genomes]
rs433706	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs449188	0.89[ASN][1000 genomes]
rs4579588	0.89[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4742765	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743336	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743338	0.89[CEU][hapmap];0.90[CHB][hapmap]
rs504640	0.90[CHB][hapmap]
rs526102	0.89[ASN][1000 genomes]
rs56408008	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57418404	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58111537	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58132610	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs692905	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs701366	1.00[CHB][hapmap]
rs701371	0.89[ASN][1000 genomes]
rs7025649	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7031176	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7048711	0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7031193	LOC286359	cis	cerebellum	SCAN
rs7031193	ERP44	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102028200	Weak transcription	Spleen	Spleen
2	chr9:102022200-102028800	Weak transcription	Psoas Muscle	Psoas
3	chr9:102022200-102028800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
6	chr9:102022400-102028600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:102022400-102028800	Weak transcription	Adipose Nuclei	Adipose
8	chr9:102022600-102028800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr9:102022800-102028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:102022800-102028600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:102022800-102028600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:102022800-102028800	Weak transcription	Primary T cells from cord blood	blood
13	chr9:102022800-102028800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:102023000-102028400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:102023600-102028600	Weak transcription	Brain Anterior Caudate	brain
16	chr9:102024400-102028200	Weak transcription	Fetal Thymus	thymus
17	chr9:102024600-102028200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:102025800-102028600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr9:102025800-102028600	Enhancers	GM12878-XiMat	blood
20	chr9:102026800-102028600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:102027600-102029400	Enhancers	Fetal Heart	heart
22	chr9:102027800-102029400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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