Variant report

Variant	rs433706
Chromosome Location	chr9:102048166-102048167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102047027..102049139-chr9:102055624..102058057,2	MCF-7	breast:
2	chr9:102047135..102049009-chr9:102049620..102052159,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1032835	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs151169	0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs162616	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs162623	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs162629	0.90[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs162630	0.83[ASN][1000 genomes]
rs1648641	0.91[ASN][1000 genomes]
rs1746155	0.89[ASN][1000 genomes]
rs184437	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs189042	1.00[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs193021	0.90[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2114429	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900576	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs383602	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs405952	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs418919	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs449188	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4579588	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4742765	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743336	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743338	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs504640	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs526102	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56408008	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57418404	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58111537	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58132610	0.85[ASN][1000 genomes]
rs692905	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701366	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs701371	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7025649	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7031176	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031193	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7048711	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv526378	chr9:102045144-102056057	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs433706	ERP44	cis	cerebellum	SCAN
rs433706	LOC286359	cis	cerebellum	SCAN
rs433706	NR4A3	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102047200-102049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:102047600-102049000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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