Variant report

Variant	rs184437
Chromosome Location	chr9:102068058-102068059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101982802..101985328-chr9:102065308..102068359,3	MCF-7	breast:
2	chr9:102067677..102069694-chr9:102073108..102075861,2	K562	blood:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1032835	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs151169	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs162616	0.83[ASN][1000 genomes]
rs162629	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs189042	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs193021	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2114429	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2900576	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs383602	0.86[ASN][1000 genomes]
rs405952	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs418919	0.81[ASN][1000 genomes]
rs433706	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs449188	0.86[ASN][1000 genomes]
rs4579588	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4742765	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743336	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743338	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs504640	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs526102	0.86[ASN][1000 genomes]
rs56408008	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57418404	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58111537	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs692905	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs701366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs701371	0.86[ASN][1000 genomes]
rs7025649	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7031176	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7031193	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7048711	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv972435	chr9:102067448-102071368	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102061800-102069400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:102062400-102070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:102066600-102069800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:102066800-102069800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:102068000-102068200	Bivalent Enhancer	K562	blood
7	chr9:102068000-102070200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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