Variant report

Variant	rs56408008
Chromosome Location	chr9:102066047-102066048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101982802..101985328-chr9:102065308..102068359,3	MCF-7	breast:
2	chr9:102065334..102066932-chr9:102581858..102584505,2	K562	blood:

Variant related genes	Relation type
ENSG00000237461	Chromatin interaction
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction
ENSG00000119508	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151169	0.94[ASN][1000 genomes]
rs162616	0.96[ASN][1000 genomes]
rs162623	0.89[ASN][1000 genomes]
rs162629	0.94[ASN][1000 genomes]
rs162630	0.83[ASN][1000 genomes]
rs1648641	0.91[ASN][1000 genomes]
rs1746155	0.89[ASN][1000 genomes]
rs184437	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs189042	0.96[ASN][1000 genomes]
rs193021	0.94[ASN][1000 genomes]
rs2114429	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900576	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs383602	1.00[ASN][1000 genomes]
rs418919	0.94[ASN][1000 genomes]
rs433706	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449188	1.00[ASN][1000 genomes]
rs4742765	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743336	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs526102	1.00[ASN][1000 genomes]
rs57418404	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58111537	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58132610	0.85[ASN][1000 genomes]
rs692905	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701371	1.00[ASN][1000 genomes]
rs7025649	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7031176	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031193	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7048711	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102061800-102066200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:102061800-102069400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:102062200-102066400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:102062400-102066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:102062400-102070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:102065200-102066200	Weak transcription	K562	blood
8	chr9:102066000-102066400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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