Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101983627..101985150-chr9:102033183..102036041,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000119523	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151169	1.00[ASN][1000 genomes]
rs162616	0.98[ASN][1000 genomes]
rs162623	0.94[ASN][1000 genomes]
rs162629	1.00[ASN][1000 genomes]
rs162630	0.89[ASN][1000 genomes]
rs1648641	0.93[ASN][1000 genomes]
rs1746155	0.94[ASN][1000 genomes]
rs184437	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs189042	0.98[ASN][1000 genomes]
rs193021	1.00[ASN][1000 genomes]
rs2114429	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2900576	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383602	0.94[ASN][1000 genomes]
rs418919	1.00[ASN][1000 genomes]
rs433706	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs449188	0.94[ASN][1000 genomes]
rs4742765	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs526102	0.94[ASN][1000 genomes]
rs56408008	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57418404	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58111537	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58132610	0.91[ASN][1000 genomes]
rs692905	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs701371	0.94[ASN][1000 genomes]
rs7025649	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7031176	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7031193	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7048711	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
3	chr9:102029800-102034800	Weak transcription	GM12878-XiMat	blood
4	chr9:102031800-102036600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:102034600-102035800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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