Variant report

Variant	rs4078235
Chromosome Location	chr2:160958460-160958461
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160953931..160959530-chr2:160960677..160963747,5	MCF-7	breast:
2	chr2:160956526..160958780-chr2:161077577..161080506,2	MCF-7	breast:
3	chr2:160947997..160950748-chr2:160956383..160959189,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10497212	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12478287	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16844742	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16844790	0.88[ASN][1000 genomes]
rs16844802	0.88[ASN][1000 genomes]
rs28867432	0.83[ASN][1000 genomes]
rs34347603	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076843	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4595921	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4664316	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4665146	0.83[EUR][1000 genomes]
rs4665154	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4665156	0.88[ASN][1000 genomes]
rs55759330	0.83[EUR][1000 genomes]
rs58716738	0.81[ASN][1000 genomes]
rs60915384	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62177892	0.83[ASN][1000 genomes]
rs72967898	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72969807	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72969809	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72975471	0.88[ASN][1000 genomes]
rs72975474	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72977408	0.88[ASN][1000 genomes]
rs72978513	0.83[EUR][1000 genomes]
rs72978520	0.83[EUR][1000 genomes]
rs72978527	0.83[EUR][1000 genomes]
rs7557804	0.81[ASN][1000 genomes]
rs7573469	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160948600-160959800	Weak transcription	HSMM	muscle
2	chr2:160950400-160958600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:160953800-160958600	Weak transcription	HSMMtube	muscle
6	chr2:160953800-160959000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:160954400-160958600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:160954600-160970800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:160954600-160993000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:160954800-160958800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:160954800-160963800	Weak transcription	Fetal Intestine Large	intestine
12	chr2:160954800-160966200	Weak transcription	Fetal Intestine Small	intestine
13	chr2:160955400-160965000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:160955800-160959000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:160955800-160959200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:160955800-160968800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:160956200-160965600	Strong transcription	HMEC	breast
18	chr2:160956600-160958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:160956600-160958800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr2:160957000-160970200	Weak transcription	Pancreas	Pancrea
21	chr2:160957400-160981200	Weak transcription	Lung	lung
22	chr2:160958400-160959400	Strong transcription	Psoas Muscle	Psoas
23	chr2:160958400-160965200	Strong transcription	NHEK	skin

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