Variant report

Variant	rs16844742
Chromosome Location	chr2:160931284-160931285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160928221..160929851-chr2:160929871..160931869,2	MCF-7	breast:
2	chr2:160929802..160931814-chr2:160933151..160935876,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10497212	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12478287	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16844790	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16844802	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17284082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2925754	0.87[ASW][hapmap];0.81[TSI][hapmap]
rs3111395	0.87[CHB][hapmap]
rs3111397	1.00[ASW][hapmap];0.87[CHB][hapmap];0.81[LWK][hapmap];0.81[TSI][hapmap]
rs34347603	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4076843	0.82[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4078235	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4337434	0.83[YRI][hapmap]
rs4595921	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4664316	0.87[ASN][1000 genomes]
rs4665146	1.00[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.87[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4665154	0.83[CHB][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4665156	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55677609	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55759330	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58716738	0.89[ASN][1000 genomes]
rs60454853	0.88[ASN][1000 genomes]
rs60915384	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62175380	0.85[ASN][1000 genomes]
rs62177892	0.89[ASN][1000 genomes]
rs72967898	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72969807	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72969809	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72975471	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72975474	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72977408	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72978513	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978520	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978527	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72979930	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7557804	0.89[ASN][1000 genomes]
rs7573469	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7581712	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7603686	0.87[CHB][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160927200-160934600	Weak transcription	Placenta	Placenta
2	chr2:160929200-160936200	Enhancers	Fetal Intestine Small	intestine
3	chr2:160929400-160932200	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:160929400-160936200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr2:160929400-160940200	Weak transcription	Right Atrium	heart
6	chr2:160929800-160934400	Enhancers	Fetal Intestine Large	intestine
7	chr2:160930200-160932200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:160930200-160932200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:160930200-160934600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:160930600-160931600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:160931000-160931400	Enhancers	NHDF-Ad	bronchial
12	chr2:160931000-160932200	Enhancers	NH-A	brain
13	chr2:160931000-160932200	Enhancers	Osteobl	bone
14	chr2:160931000-160933000	Enhancers	Hela-S3	cervix
15	chr2:160931200-160931400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:160931200-160931600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:160931200-160932200	Enhancers	Small Intestine	intestine
18	chr2:160931200-160932400	Enhancers	HMEC	breast
19	chr2:160931200-160933200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr2:160931200-160934400	Enhancers	HUVEC	blood vessel

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