Variant report

Variant	rs4665154
Chromosome Location	chr2:160955896-160955897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160953931..160959530-chr2:160960677..160963747,5	MCF-7	breast:
2	chr2:160954642..160956327-chr2:161096602..161099535,2	MCF-7	breast:
3	chr2:160471520..160473353-chr2:160955737..160957337,2	MCF-7	breast:
4	chr2:160955602..160957276-chr2:160963515..160965227,2	MCF-7	breast:
5	chr2:160954217..160956346-chr2:160959486..160961538,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123636	Chromatin interaction
ENSG00000224152	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10497212	0.83[CHB][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844742	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16844790	0.83[CHB][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844802	0.83[CHB][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17284082	0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3111397	0.82[YRI][hapmap]
rs34347603	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4076843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078235	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4337434	0.84[YRI][hapmap]
rs4595921	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4664316	0.90[ASN][1000 genomes]
rs4665146	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4665156	0.82[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55677609	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55759330	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58716738	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60454853	0.92[ASN][1000 genomes]
rs60915384	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175380	0.88[ASN][1000 genomes]
rs62175383	0.83[ASN][1000 genomes]
rs62177892	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72967898	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969807	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72969809	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975471	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975474	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72977408	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978513	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978520	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978527	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72979930	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7557804	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7573469	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581712	0.83[CHB][hapmap];0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160948600-160959800	Weak transcription	HSMM	muscle
2	chr2:160950400-160958600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:160953400-160958400	Weak transcription	NHEK	skin
6	chr2:160953800-160958600	Weak transcription	HSMMtube	muscle
7	chr2:160953800-160959000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:160954400-160958600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:160954600-160956600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:160954600-160970800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr2:160954600-160993000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr2:160954800-160958800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:160954800-160963800	Weak transcription	Fetal Intestine Large	intestine
14	chr2:160954800-160966200	Weak transcription	Fetal Intestine Small	intestine
15	chr2:160955400-160956200	Weak transcription	HMEC	breast
16	chr2:160955400-160958400	Weak transcription	Psoas Muscle	Psoas
17	chr2:160955400-160965000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:160955800-160959000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:160955800-160959200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:160955800-160968800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links