Variant report

Variant	rs72978520
Chromosome Location	chr2:160926113-160926114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10497212	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12478287	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844742	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844790	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16844802	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17284082	0.80[EUR][1000 genomes]
rs34347603	0.84[EUR][1000 genomes]
rs4076843	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4078235	0.83[EUR][1000 genomes]
rs4595921	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4665146	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4665154	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4665156	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55677609	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55759330	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60915384	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967898	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72969807	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72969809	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72975471	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72975474	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72977408	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72978513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72978527	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979930	0.81[EUR][1000 genomes]
rs7573469	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160921000-160930200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:160922600-160928000	Weak transcription	Fetal Intestine Large	intestine
3	chr2:160926000-160926200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links