Variant report

Variant	rs41267937
Chromosome Location	chr6:26600205-26600206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26594524..26600977-chr6:27096034..27104390,19	K562	blood:
2	chr6:26575403..26577801-chr6:26599976..26601665,3	K562	blood:
3	chr6:26597702..26602573-chr6:27112472..27116781,7	MCF-7	breast:
4	chr6:26599522..26601282-chr6:26618255..26620897,2	K562	blood:
5	chr6:26330749..26333675-chr6:26599169..26602051,2	K562	blood:
6	chr6:26198217..26201079-chr6:26599187..26601123,2	K562	blood:
7	chr6:26593362..26600987-chr6:27097692..27106488,18	K562	blood:
8	chr6:26592995..26594553-chr6:26600001..26601767,2	K562	blood:
9	chr6:26598518..26601187-chr6:27104748..27107582,2	MCF-7	breast:
10	chr6:26599209..26601665-chr6:27091751..27095909,4	K562	blood:
11	chr6:26599541..26602825-chr6:26986557..26990306,3	K562	blood:
12	chr6:26599531..26602687-chr6:27093072..27095909,3	K562	blood:
13	chr6:26365273..26367962-chr6:26599757..26601303,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197903	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000186470	Chromatin interaction
ENSG00000215979	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000197846	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11963559	0.92[EUR][1000 genomes]
rs41267935	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45568331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45600933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57838818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61646623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393299	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395204	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395235	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739936	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26598000-26604800	Weak transcription	Aorta	Aorta
2	chr6:26598000-26606800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:26598200-26607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:26598400-26600400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:26598400-26600400	Strong transcription	A549	lung
6	chr6:26598400-26600600	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:26598400-26601000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:26598400-26601200	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr6:26598600-26600400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:26598600-26600400	Strong transcription	Colon Smooth Muscle	Colon
11	chr6:26598600-26600400	Strong transcription	Ovary	ovary
12	chr6:26598600-26600600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:26598600-26600600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:26598600-26600600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:26598600-26600600	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr6:26598600-26600800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:26598600-26600800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:26598600-26600800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:26598600-26600800	Strong transcription	Adipose Nuclei	Adipose
20	chr6:26598600-26600800	Strong transcription	Brain Anterior Caudate	brain
21	chr6:26598600-26600800	Strong transcription	Brain Cingulate Gyrus	brain
22	chr6:26598600-26600800	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr6:26598600-26600800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:26598600-26600800	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:26598600-26600800	Strong transcription	Fetal Intestine Large	intestine
26	chr6:26598600-26600800	Strong transcription	Fetal Muscle Leg	muscle
27	chr6:26598600-26600800	Strong transcription	Rectal Smooth Muscle	rectum
28	chr6:26598600-26600800	Strong transcription	K562	blood
29	chr6:26598600-26600800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:26598600-26601000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr6:26598600-26601200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:26598600-26601200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:26598600-26601200	Strong transcription	Brain Substantia Nigra	brain
34	chr6:26598600-26601200	Strong transcription	Fetal Lung	lung
35	chr6:26598600-26601200	Strong transcription	NHEK	skin
36	chr6:26598600-26601600	Strong transcription	Fetal Thymus	thymus
37	chr6:26598600-26601800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:26598600-26603200	Weak transcription	Fetal Brain Male	brain
39	chr6:26598800-26600400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:26598800-26600400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:26598800-26600400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:26598800-26600400	Strong transcription	Liver	Liver
43	chr6:26598800-26600400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:26598800-26600400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr6:26598800-26600400	Strong transcription	NHDF-Ad	bronchial
46	chr6:26598800-26600600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:26598800-26600800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:26598800-26600800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:26598800-26600800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:26598800-26600800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links