Variant report

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26171710..26174567-chr6:26566701..26569487,2	K562	blood:
2	chr6:26156493..26160609-chr6:26566713..26572551,10	K562	blood:
3	chr6:26525492..26528021-chr6:26567722..26570111,2	MCF-7	breast:
4	chr6:26536222..26540133-chr6:26565164..26569470,5	K562	blood:
5	chr6:26566443..26568819-chr6:27113127..27115950,2	MCF-7	breast:
6	chr6:26209148..26211378-chr6:26567732..26569489,2	K562	blood:
7	chr6:26567325..26570025-chr6:26570280..26572074,2	MCF-7	breast:
8	chr6:26456882..26459678-chr6:26567698..26569705,2	K562	blood:
9	chr6:26199689..26201412-chr6:26567546..26569056,2	K562	blood:
10	chr6:26566413..26579648-chr6:26592370..26599609,38	K562	blood:
11	chr6:26325742..26329401-chr6:26567650..26570455,4	K562	blood:
12	chr6:26536432..26537991-chr6:26565891..26568258,2	K562	blood:
13	chr6:26537819..26539463-chr6:26567519..26569805,2	MCF-7	breast:
14	chr6:26553141..26555933-chr6:26567279..26569954,2	MCF-7	breast:
15	chr6:26331657..26333799-chr6:26567368..26569524,2	K562	blood:
16	chr6:26519493..26522345-chr6:26567503..26569793,2	MCF-7	breast:
17	chr6:26285527..26288388-chr6:26566429..26569428,2	K562	blood:
18	chr6:26471319..26475410-chr6:26567164..26571952,5	K562	blood:
19	chr6:26325462..26328933-chr6:26567431..26570210,5	K562	blood:
20	chr6:26216366..26219129-chr6:26567690..26570174,4	K562	blood:
21	chr6:26204417..26206259-chr6:26565603..26568682,3	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11963559	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41267935	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41267937	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45568331	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45600933	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57838818	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61646623	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393299	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395235	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768682	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26557400-26568400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:26559600-26568200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:26562000-26568400	Weak transcription	Aorta	Aorta
4	chr6:26562200-26568400	Weak transcription	Pancreas	Pancrea
5	chr6:26564400-26568200	Weak transcription	Dnd41	blood
6	chr6:26566000-26568200	Enhancers	HepG2	liver
7	chr6:26566000-26568400	Weak transcription	Placenta	Placenta
8	chr6:26567600-26568200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:26568000-26568200	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:26568000-26568200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:26568000-26568200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:26568000-26568400	Flanking Active TSS	K562	blood
13	chr6:26568000-26569200	Active TSS	Hela-S3	cervix
14	chr6:26568000-26569800	Active TSS	H1 Cell Line	embryonic stem cell
15	chr6:26568000-26569800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:26568000-26569800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:26568000-26569800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:26568000-26570000	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr6:26568000-26570000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr6:26568000-26570200	Active TSS	HUES64 Cell Line	embryonic stem cell

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