Variant report
| Variant | rs73395235 |
|---|---|
| Chromosome Location | chr6:26586819-26586820 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:26578835..26580691-chr6:26586328..26588441,2 | K562 | blood: | |
| 2 | chr6:26586123..26588537-chr6:26597287..26599098,2 | K562 | blood: | |
| 3 | chr6:26575145..26580691-chr6:26582301..26587887,10 | K562 | blood: | |
| 4 | chr6:26586018..26588983-chr6:26608710..26610961,2 | K562 | blood: | |
| 5 | chr6:26586469..26589101-chr6:26591005..26592761,2 | K562 | blood: | |
| 6 | chr6:26585934..26588947-chr6:27103100..27106141,3 | K562 | blood: | |
| 7 | chr6:26205631..26208753-chr6:26584757..26587619,3 | K562 | blood: | |
| 8 | chr6:26580716..26583805-chr6:26585836..26589281,4 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF322-6 | chr6:26586042-26587327 | ucscGeneNc_uc003nie_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11963559 | 0.88[EUR][1000 genomes] |
| rs41267935 | 0.84[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs41267937 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs45568331 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs45600933 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57838818 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61646623 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73393299 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73395204 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7739936 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7768682 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
