Variant report

Variant	rs73393299
Chromosome Location	chr6:26561702-26561703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11962165	0.80[AFR][1000 genomes]
rs11963559	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41267935	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41267937	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45568331	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45600933	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57838818	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61646623	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395204	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395235	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739936	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768682	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26555200-26561800	Weak transcription	Aorta	Aorta
2	chr6:26555400-26562000	Weak transcription	Pancreas	Pancrea
3	chr6:26557400-26568400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:26558000-26563000	Weak transcription	K562	blood
5	chr6:26559600-26568200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:26561200-26562800	Flanking Active TSS	HepG2	liver
7	chr6:26561600-26562000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:26561600-26562200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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