Variant report

Variant	rs7768682
Chromosome Location	chr6:26598418-26598419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26155821..26161666-chr6:26595746..26599191,6	K562	blood:
2	chr6:26123945..26125914-chr6:26596676..26599538,2	MCF-7	breast:
3	chr6:26594524..26600977-chr6:27096034..27104390,19	K562	blood:
4	chr4:99944161..99945674-chr6:26596054..26598932,3	K562	blood:
5	chr6:26586123..26588537-chr6:26597287..26599098,2	K562	blood:
6	chr6:26597702..26602573-chr6:27112472..27116781,7	MCF-7	breast:
7	chr6:26593362..26600987-chr6:27097692..27106488,18	K562	blood:
8	chr6:26500256..26501997-chr6:26596237..26599100,2	K562	blood:
9	chr4:99942655..99945658-chr6:26596311..26598592,3	MCF-7	breast:
10	chr6:26595623..26599966-chr6:27100615..27102925,4	MCF-7	breast:
11	chr6:26536174..26539515-chr6:26593643..26598624,4	K562	blood:
12	chr4:99942650..99945674-chr6:26595832..26598932,6	K562	blood:
13	chr6:26122958..26124980-chr6:26596151..26598779,2	K562	blood:
14	chr6:26593150..26599498-chr6:27112360..27118946,12	K562	blood:
15	chr6:26595534..26598582-chr6:27105401..27109406,3	K562	blood:
16	chr6:26535400..26541597-chr6:26593643..26598951,8	K562	blood:
17	chr6:26595477..26598975-chr6:26986599..26989051,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124635	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000250496	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000124557	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000164024	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000168298	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11963559	0.90[EUR][1000 genomes]
rs41267935	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41267937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45568331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45600933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57838818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61646623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393299	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395204	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395235	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739936	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7768682	ABT1	cis	multi-tissue	Pritchard

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26593800-26598600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:26596000-26598600	Active TSS	HSMM	muscle
3	chr6:26597200-26598600	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
4	chr6:26597200-26598800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
5	chr6:26597400-26598800	Transcr. at gene 5' and 3'	Dnd41	blood
6	chr6:26597600-26598600	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr6:26597800-26598600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:26597800-26598600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:26597800-26598600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:26597800-26598600	Flanking Active TSS	NH-A	brain
11	chr6:26598000-26598600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr6:26598000-26598600	Enhancers	Stomach Mucosa	stomach
13	chr6:26598000-26598800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:26598000-26604800	Weak transcription	Aorta	Aorta
15	chr6:26598000-26606800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:26598200-26598600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:26598200-26598600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:26598200-26598600	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
19	chr6:26598200-26598600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
20	chr6:26598200-26598600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:26598200-26598600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:26598200-26598600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:26598200-26598600	Genic enhancers	Colon Smooth Muscle	Colon
24	chr6:26598200-26598600	Genic enhancers	Fetal Intestine Large	intestine
25	chr6:26598200-26598600	Genic enhancers	Fetal Muscle Leg	muscle
26	chr6:26598200-26598600	Genic enhancers	Fetal Thymus	thymus
27	chr6:26598200-26598600	Transcr. at gene 5' and 3'	Rectal Smooth Muscle	rectum
28	chr6:26598200-26598600	Genic enhancers	Right Ventricle	heart
29	chr6:26598200-26598600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:26598200-26598600	Flanking Active TSS	HMEC	breast
31	chr6:26598200-26598600	Transcr. at gene 5' and 3'	NHEK	skin
32	chr6:26598200-26598800	Transcr. at gene 5' and 3'	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:26598200-26598800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:26598200-26598800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:26598200-26598800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:26598200-26598800	Genic enhancers	Placenta	Placenta
37	chr6:26598200-26598800	Genic enhancers	Lung	lung
38	chr6:26598200-26598800	Enhancers	Right Atrium	heart
39	chr6:26598200-26598800	Transcr. at gene 5' and 3'	Hela-S3	cervix
40	chr6:26598200-26599000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr6:26598200-26599000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:26598200-26599000	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
43	chr6:26598200-26599200	Genic enhancers	Primary B cells from peripheral blood	blood
44	chr6:26598200-26599200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:26598200-26599200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:26598200-26599200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:26598200-26599200	Genic enhancers	Thymus	Thymus
48	chr6:26598200-26599200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
49	chr6:26598200-26607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr6:26598400-26598600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links