Variant report

Variant	rs41287365
Chromosome Location	chr9:72968038-72968039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72962840..72966479-chr9:72967543..72971409,5	K562	blood:
2	chr9:72967533..72968221-chr9:73217175..73217782,2	MCF-7	breast:
3	chr9:72967818..72968323-chr9:73217093..73217846,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1927101	0.84[EUR][1000 genomes]
rs41312186	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5019539	0.84[EUR][1000 genomes]
rs61752954	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7024812	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72936000-72970800	Weak transcription	Psoas Muscle	Psoas
2	chr9:72939600-72974000	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:72943200-72968600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:72943600-72970800	Weak transcription	Gastric	stomach
5	chr9:72944000-72970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:72944000-72974600	Weak transcription	Aorta	Aorta
7	chr9:72944000-72978800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:72944000-73002600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:72944200-72968600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:72944200-72974000	Weak transcription	Spleen	Spleen
11	chr9:72944200-72974800	Weak transcription	Lung	lung
12	chr9:72948000-72983400	Weak transcription	HSMMtube	muscle
13	chr9:72948400-72980800	Weak transcription	NHEK	skin
14	chr9:72952200-72968600	Weak transcription	K562	blood
15	chr9:72952200-72972800	Weak transcription	A549	lung
16	chr9:72957600-72969400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:72959000-72969000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:72960200-72969200	Strong transcription	Dnd41	blood
19	chr9:72960400-72969000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr9:72960600-72968800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:72961200-72968200	Weak transcription	NHLF	lung
22	chr9:72962000-72972000	Weak transcription	Brain Anterior Caudate	brain
23	chr9:72962200-72969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr9:72962200-72974200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:72963600-72968600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr9:72963800-72972400	Weak transcription	Thymus	Thymus
27	chr9:72963800-72977800	Weak transcription	Esophagus	oesophagus
28	chr9:72964200-72980800	Weak transcription	Pancreas	Pancrea
29	chr9:72964400-72974000	Weak transcription	Fetal Intestine Small	intestine
30	chr9:72964800-72975200	Weak transcription	Primary B cells from cord blood	blood
31	chr9:72965000-72973600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:72965400-72971000	Weak transcription	HepG2	liver
33	chr9:72965400-72975000	Weak transcription	Brain Germinal Matrix	brain
34	chr9:72965600-72969000	Weak transcription	Fetal Kidney	kidney
35	chr9:72965600-72970800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:72965600-72971000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr9:72965600-72974600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr9:72965800-72968800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:72965800-72974000	Weak transcription	Fetal Brain Female	brain
40	chr9:72965800-72974400	Weak transcription	Brain Substantia Nigra	brain
41	chr9:72965800-72974400	Weak transcription	GM12878-XiMat	blood
42	chr9:72965800-72974600	Weak transcription	Fetal Brain Male	brain
43	chr9:72965800-72976000	Weak transcription	Hela-S3	cervix
44	chr9:72965800-72976400	Weak transcription	Fetal Lung	lung
45	chr9:72965800-72979600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr9:72966000-72968200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:72966000-72968200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr9:72966000-72971800	Weak transcription	Brain Hippocampus Middle	brain
49	chr9:72966000-72972400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:72966200-72970800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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