Variant report

Variant	rs61752954
Chromosome Location	chr9:72912914-72912915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72912548..72915334-chr9:72916936..72919287,2	MCF-7	breast:
2	chr9:72905525..72907442-chr9:72911391..72913609,2	MCF-7	breast:
3	chr9:72903671..72905306-chr9:72912810..72915435,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1927101	0.86[EUR][1000 genomes]
rs41287365	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41312186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5019539	0.86[EUR][1000 genomes]
rs7024812	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
3	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
4	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
6	chr9:72877000-72939800	Weak transcription	Gastric	stomach
7	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:72885400-72916800	Weak transcription	Esophagus	oesophagus
12	chr9:72887600-72916800	Weak transcription	Aorta	Aorta
13	chr9:72891000-72923400	Strong transcription	Dnd41	blood
14	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:72894600-72917000	Weak transcription	Pancreas	Pancrea
16	chr9:72896200-72916800	Weak transcription	Right Ventricle	heart
17	chr9:72898200-72922200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:72899000-72914600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:72899200-72914200	Weak transcription	NHEK	skin
20	chr9:72899600-72913000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr9:72900600-72916800	Weak transcription	Lung	lung
22	chr9:72900600-72916800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:72900600-72924000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:72900600-72939400	Weak transcription	Small Intestine	intestine
25	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr9:72900800-72916800	Weak transcription	Brain Substantia Nigra	brain
27	chr9:72902200-72915000	Weak transcription	Left Ventricle	heart
28	chr9:72903000-72930400	Weak transcription	Brain Angular Gyrus	brain
29	chr9:72906800-72916800	Weak transcription	Thymus	Thymus
30	chr9:72906800-72919000	Weak transcription	Ovary	ovary
31	chr9:72907000-72913000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:72907000-72913000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:72907000-72914400	Weak transcription	HSMMtube	muscle
34	chr9:72907000-72916200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:72907000-72916800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:72907000-72916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:72907000-72917200	Strong transcription	Primary B cells from cord blood	blood
38	chr9:72907000-72917600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:72907000-72924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:72907200-72915000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr9:72907200-72915200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr9:72907200-72916200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr9:72907200-72942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr9:72907400-72914400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr9:72907400-72914400	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:72907600-72913200	Weak transcription	Fetal Brain Female	brain
47	chr9:72907600-72914200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:72907600-72914200	Weak transcription	HepG2	liver
49	chr9:72907800-72916000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:72908000-72924400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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