Variant report

Variant	rs4142803
Chromosome Location	chr6:114018268-114018269
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:
2	chr6:114017203..114020038-chr6:114083854..114086336,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2027301	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945501	0.81[AMR][1000 genomes]
rs4945967	0.81[AMR][1000 genomes]
rs4945968	0.81[AMR][1000 genomes]
rs773692	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs9372372	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs9374420	0.83[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9387167	0.83[CEU][hapmap];0.83[CHB][hapmap];0.80[AMR][1000 genomes]
rs9400653	0.81[AMR][1000 genomes]
rs9400656	0.81[AMR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114014400-114020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:114015000-114020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:114015400-114020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:114015400-114020200	Enhancers	Osteobl	bone
5	chr6:114015600-114018400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:114015800-114019000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:114016000-114018600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:114016000-114020000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:114016200-114018400	Weak transcription	HMEC	breast
11	chr6:114016200-114018600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:114016200-114018600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:114016200-114018600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:114016200-114019000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung
16	chr6:114016400-114018600	Weak transcription	NHLF	lung
17	chr6:114016400-114018800	Weak transcription	HSMMtube	muscle
18	chr6:114016400-114019400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr6:114016400-114022000	Weak transcription	Stomach Mucosa	stomach
20	chr6:114017000-114020200	Enhancers	NHDF-Ad	bronchial
21	chr6:114017200-114018600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:114017400-114019800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:114017600-114018800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:114017600-114020000	Weak transcription	HepG2	liver
25	chr6:114017800-114019000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:114018000-114019800	Enhancers	NH-A	brain
27	chr6:114018200-114018400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:114018200-114018600	Weak transcription	A549	lung
29	chr6:114018200-114018600	Enhancers	GM12878-XiMat	blood
30	chr6:114018200-114019600	Enhancers	NHEK	skin
31	chr6:114018200-114020200	Enhancers	HSMM	muscle

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