Variant report

Variant	rs4945968
Chromosome Location	chr6:114006780-114006781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10872102	0.84[ASN][1000 genomes]
rs12176307	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1277834	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4142803	0.87[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs4945501	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945964	0.83[ASN][1000 genomes]
rs4945966	0.83[ASN][1000 genomes]
rs4945967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs773692	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374415	0.81[ASN][1000 genomes]
rs9374416	0.83[ASN][1000 genomes]
rs9374417	0.83[ASN][1000 genomes]
rs9374420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400653	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400656	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4945968	GPR6	cis	cerebellum	SCAN
rs4945968	RPF2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113999000-114007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:114004400-114008400	Enhancers	HepG2	liver
3	chr6:114006000-114007000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:114006000-114011000	Weak transcription	HSMM	muscle
5	chr6:114006000-114014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:114006000-114015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:114006600-114007800	Enhancers	Stomach Mucosa	stomach
8	chr6:114006600-114011200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:114006600-114011400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:114006600-114011600	Weak transcription	HMEC	breast
11	chr6:114006600-114011600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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