Variant report

Variant	rs10872102
Chromosome Location	chr6:113990386-113990387
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113986306..113987882-chr6:113989407..113992335,2	MCF-7	breast:
2	chr6:113988623..113991575-chr6:114178978..114181550,2	MCF-7	breast:

rs_ID	r²[population]
rs11760159	0.82[ASN][1000 genomes]
rs12176307	0.88[ASN][1000 genomes]
rs1277834	0.84[ASN][1000 genomes]
rs4142803	0.82[CHB][hapmap]
rs4945501	0.84[ASN][1000 genomes]
rs4945965	0.83[ASN][1000 genomes]
rs4945967	0.84[ASN][1000 genomes]
rs4945968	0.84[ASN][1000 genomes]
rs6922998	0.83[ASN][1000 genomes]
rs773692	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs9374420	0.95[CHB][hapmap]
rs9387167	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs9400653	0.88[ASN][1000 genomes]
rs9400656	0.87[ASN][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113976000-113990800	Weak transcription	Psoas Muscle	Psoas
2	chr6:113982400-113993600	Weak transcription	Placenta	Placenta
3	chr6:113983000-113993800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:113984200-113993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:113984600-113993800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:113985600-113990800	Weak transcription	Ovary	ovary
7	chr6:113989400-113992600	Enhancers	Fetal Lung	lung
8	chr6:113989400-113993400	Enhancers	GM12878-XiMat	blood
9	chr6:113989400-113993600	Enhancers	HepG2	liver
10	chr6:113989600-113990800	Weak transcription	Small Intestine	intestine
11	chr6:113989600-113991000	Enhancers	Rectal Smooth Muscle	rectum
12	chr6:113989800-113990400	Enhancers	Fetal Intestine Large	intestine
13	chr6:113989800-113991000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:113989800-113991200	Enhancers	Adipose Nuclei	Adipose
15	chr6:113990000-113991000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:113990000-113993800	Weak transcription	Fetal Kidney	kidney
17	chr6:113990200-113990400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:113990200-113990400	Enhancers	NHLF	lung
19	chr6:113990200-113990600	Enhancers	Brain Hippocampus Middle	brain
20	chr6:113990200-113990800	Enhancers	Colon Smooth Muscle	Colon
21	chr6:113990200-113991000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:113990200-113991000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr6:113990200-113991000	Enhancers	Fetal Intestine Small	intestine
24	chr6:113990200-113991200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:113990200-113995600	Enhancers	Fetal Stomach	stomach

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